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LINC00443 (long intergenic non-protein coding RNA 443)

Identity

Other alias-
HGNC (Hugo) LINC00443
LocusID (NCBI) 100874173
Atlas_Id 65424
Location 13q33.3  [Link to chromosome band 13q33]
Location_base_pair Starts at 106653880 and ends at 106672180 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00443   42780
Cards
Entrez_Gene (NCBI)LINC00443  100874173  long intergenic non-protein coding RNA 443
Aliases
GeneCards (Weizmann)LINC00443
Ensembl hg19 (Hinxton)ENSG00000230156 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230156 [Gene_View]  chr13:106653880-106672180 [Contig_View]  LINC00443 [Vega]
ICGC DataPortalENSG00000230156
TCGA cBioPortalLINC00443
AceView (NCBI)LINC00443
Genatlas (Paris)LINC00443
WikiGenes100874173
SOURCE (Princeton)LINC00443
Genetics Home Reference (NIH)LINC00443
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00443  -     chr13:106653880-106672180 +  13q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00443  -     13q33.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00443 - 13q33.3 [CytoView hg19]  LINC00443 - 13q33.3 [CytoView hg38]
Mapping of homologs : NCBILINC00443 [Mapview hg19]  LINC00443 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG205531 BX117718 DB312066
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00443
Cluster EST : UnigeneHs.569297 [ NCBI ]
CGAP (NCI)Hs.569297
Alternative Splicing GalleryENSG00000230156
Gene ExpressionLINC00443 [ NCBI-GEO ]   LINC00443 [ EBI - ARRAY_EXPRESS ]   LINC00443 [ SEEK ]   LINC00443 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00443 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874173
GTEX Portal (Tissue expression)LINC00443
Human Protein AtlasENSG00000230156-LINC00443 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00443
DMDM Disease mutations100874173
Blocks (Seattle)LINC00443
Human Protein Atlas [tissue]ENSG00000230156-LINC00443 [tissue]
Protein Interaction databases
FunCoupENSG00000230156
BioGRIDLINC00443
STRING (EMBL)LINC00443
ZODIACLINC00443
Ontologies - Pathways
Huge Navigator LINC00443 [HugePedia]
snp3D : Map Gene to Disease100874173
BioCentury BCIQLINC00443
ClinGenLINC00443
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874173
Clinical trialLINC00443
Miscellaneous
canSAR (ICR)LINC00443 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00443
EVEXLINC00443
GoPubMedLINC00443
iHOPLINC00443
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:28:18 CET 2017

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