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LINC00448 (long intergenic non-protein coding RNA 448)

Identity

Other alias-
HGNC (Hugo) LINC00448
LocusID (NCBI) 100874176
Atlas_Id 65426
Location 13q21.31  [Link to chromosome band 13q21]
Location_base_pair Starts at 62672285 and ends at 62796692 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00448   42785
Cards
Entrez_Gene (NCBI)LINC00448  100874176  long intergenic non-protein coding RNA 448
Aliases
GeneCards (Weizmann)LINC00448
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:62672285-62796692 [Contig_View]  LINC00448 [Vega]
TCGA cBioPortalLINC00448
AceView (NCBI)LINC00448
Genatlas (Paris)LINC00448
WikiGenes100874176
SOURCE (Princeton)LINC00448
Genetics Home Reference (NIH)LINC00448
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00448  -     chr13:62672285-62796692 -  13q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00448  -     13q21.31   [Description]    (hg19-Feb_2009)
EnsemblLINC00448 - 13q21.31 [CytoView hg19]  LINC00448 - 13q21.31 [CytoView hg38]
Mapping of homologs : NCBILINC00448 [Mapview hg19]  LINC00448 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA634411 AA971462 BU569948 CR741874
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00448
Cluster EST : UnigeneHs.402083 [ NCBI ]
CGAP (NCI)Hs.402083
Gene ExpressionLINC00448 [ NCBI-GEO ]   LINC00448 [ EBI - ARRAY_EXPRESS ]   LINC00448 [ SEEK ]   LINC00448 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00448 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874176
GTEX Portal (Tissue expression)LINC00448
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00448
DMDM Disease mutations100874176
Blocks (Seattle)LINC00448
Protein Interaction databases
BioGRIDLINC00448
STRING (EMBL)LINC00448
ZODIACLINC00448
Ontologies - Pathways
Huge Navigator LINC00448 [HugePedia]
snp3D : Map Gene to Disease100874176
BioCentury BCIQLINC00448
ClinGenLINC00448
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874176
Clinical trialLINC00448
Miscellaneous
canSAR (ICR)LINC00448 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00448
EVEXLINC00448
GoPubMedLINC00448
iHOPLINC00448
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:36:52 CET 2017

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