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LINC00457 (long intergenic non-protein coding RNA 457)

Identity

Alias (NCBI)-
HGNC (Hugo) LINC00457
LocusID (NCBI) 100874179
Atlas_Id 65429
Location 13q13.2  [Link to chromosome band 13q13]
Location_base_pair Starts at 34435451 and ends at 34640685 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LINC00457   42805
Cards
Entrez_Gene (NCBI)LINC00457    long intergenic non-protein coding RNA 457
Aliases
GeneCards (Weizmann)LINC00457
Ensembl hg19 (Hinxton)ENSG00000225179 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225179 [Gene_View]  ENSG00000225179 [Sequence]  chr13:34435451-34640685 [Contig_View]  LINC00457 [Vega]
ICGC DataPortalENSG00000225179
TCGA cBioPortalLINC00457
AceView (NCBI)LINC00457
Genatlas (Paris)LINC00457
SOURCE (Princeton)LINC00457
Genetics Home Reference (NIH)LINC00457
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00457  -     chr13:34435451-34640685 -  13q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00457  -     13q13.2   [Description]    (hg19-Feb_2009)
GoldenPathLINC00457 - 13q13.2 [CytoView hg19]  LINC00457 - 13q13.2 [CytoView hg38]
ImmunoBaseENSG00000225179
genome Data Viewer NCBILINC00457 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI201900 AI972930
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00457
Alternative Splicing GalleryENSG00000225179
Gene ExpressionLINC00457 [ NCBI-GEO ]   LINC00457 [ EBI - ARRAY_EXPRESS ]   LINC00457 [ SEEK ]   LINC00457 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00457 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00457 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100874179
GTEX Portal (Tissue expression)LINC00457
Human Protein AtlasENSG00000225179-LINC00457 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00457
Blocks (Seattle)LINC00457
Human Protein Atlas [tissue]ENSG00000225179-LINC00457 [tissue]
Protein Interaction databases
BioGRIDLINC00457
STRING (EMBL)LINC00457
ZODIACLINC00457
Ontologies - Pathways
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00457
EVEXLINC00457
GoPubMedLINC00457
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 17:00:26 CET 2020

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