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LINC00458 (long intergenic non-protein coding RNA 458)

Identity

Alias_symbol (synonym)LncRNA-ES3
Other alias
HGNC (Hugo) LINC00458
LocusID (NCBI) 100507428
Atlas_Id 65430
Location 13q14.3  [Link to chromosome band 13q14]
Location_base_pair Starts at 54124324 and ends at 54132871 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00458   42807
Cards
Entrez_Gene (NCBI)LINC00458  100507428  long intergenic non-protein coding RNA 458
AliasesLncRNA-ES3
GeneCards (Weizmann)LINC00458
Ensembl hg19 (Hinxton)ENSG00000234787 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234787 [Gene_View]  chr13:54124324-54132871 [Contig_View]  LINC00458 [Vega]
ICGC DataPortalENSG00000234787
TCGA cBioPortalLINC00458
AceView (NCBI)LINC00458
Genatlas (Paris)LINC00458
WikiGenes100507428
SOURCE (Princeton)LINC00458
Genetics Home Reference (NIH)LINC00458
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00458  -     chr13:54124324-54132871 -  13q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00458  -     13q14.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00458 - 13q14.3 [CytoView hg19]  LINC00458 - 13q14.3 [CytoView hg38]
Mapping of homologs : NCBILINC00458 [Mapview hg19]  LINC00458 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC017942 BC018008 BC020935 BC026300 CX163049
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00458
Cluster EST : UnigeneHs.351262 [ NCBI ]
CGAP (NCI)Hs.351262
Alternative Splicing GalleryENSG00000234787
Gene ExpressionLINC00458 [ NCBI-GEO ]   LINC00458 [ EBI - ARRAY_EXPRESS ]   LINC00458 [ SEEK ]   LINC00458 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00458 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100507428
GTEX Portal (Tissue expression)LINC00458
Human Protein AtlasENSG00000234787-LINC00458 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00458
DMDM Disease mutations100507428
Blocks (Seattle)LINC00458
Human Protein Atlas [tissue]ENSG00000234787-LINC00458 [tissue]
Protein Interaction databases
FunCoupENSG00000234787
BioGRIDLINC00458
STRING (EMBL)LINC00458
ZODIACLINC00458
Ontologies - Pathways
Huge Navigator LINC00458 [HugePedia]
snp3D : Map Gene to Disease100507428
BioCentury BCIQLINC00458
ClinGenLINC00458
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507428
Clinical trialLINC00458
Miscellaneous
canSAR (ICR)LINC00458 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00458
EVEXLINC00458
GoPubMedLINC00458
iHOPLINC00458
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:28:20 CET 2017

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