Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC00461 (long intergenic non-protein coding RNA 461)

Identity

Alias_symbol (synonym)EyeLinc1
Visc-1a
Visc-1b
Visc-2
LOC645323
Other aliasVISC
HGNC (Hugo) LINC00461
LocusID (NCBI) 645323
Atlas_Id 65432
Location 5q14.3  [Link to chromosome band 5q14]
Location_base_pair Starts at 88540779 and ends at 88684803 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LINC00461 (5q14.3) / LINC00461 (5q14.3)LINC00461 (5q14.3) / WBSCR22 (7q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00461   42810
Cards
Entrez_Gene (NCBI)LINC00461  645323  long intergenic non-protein coding RNA 461
AliasesEyeLinc1; VISC; Visc-1a; Visc-1b; 
Visc-2
GeneCards (Weizmann)LINC00461
Ensembl hg19 (Hinxton)ENSG00000245526 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000245526 [Gene_View]  chr5:88540779-88684803 [Contig_View]  LINC00461 [Vega]
ICGC DataPortalENSG00000245526
TCGA cBioPortalLINC00461
AceView (NCBI)LINC00461
Genatlas (Paris)LINC00461
WikiGenes645323
SOURCE (Princeton)LINC00461
Genetics Home Reference (NIH)LINC00461
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00461  -     chr5:88540779-88684803 -  5q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00461  -     5q14.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00461 - 5q14.3 [CytoView hg19]  LINC00461 - 5q14.3 [CytoView hg38]
Mapping of homologs : NCBILINC00461 [Mapview hg19]  LINC00461 [Mapview hg38]
OMIM616611   
Gene and transcription
Genbank (Entrez)AK055372 AK091356 AK308694 AK309800 AK311230
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00461
Cluster EST : UnigeneHs.744298 [ NCBI ]
CGAP (NCI)Hs.744298
Alternative Splicing GalleryENSG00000245526
Gene ExpressionLINC00461 [ NCBI-GEO ]   LINC00461 [ EBI - ARRAY_EXPRESS ]   LINC00461 [ SEEK ]   LINC00461 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00461 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)645323
GTEX Portal (Tissue expression)LINC00461
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00461
DMDM Disease mutations645323
Blocks (Seattle)LINC00461
Human Protein AtlasENSG00000245526
IPIIPI00749349   
Protein Interaction databases
FunCoupENSG00000245526
BioGRIDLINC00461
STRING (EMBL)LINC00461
ZODIACLINC00461
Ontologies - Pathways
Huge Navigator LINC00461 [HugePedia]
snp3D : Map Gene to Disease645323
BioCentury BCIQLINC00461
ClinGenLINC00461
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645323
Clinical trialLINC00461
Miscellaneous
canSAR (ICR)LINC00461 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00461
EVEXLINC00461
GoPubMedLINC00461
iHOPLINC00461
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:56:36 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.