Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC00467 (long intergenic non-protein coding RNA 467)

Identity

Alias_namesC1orf97
chromosome 1 open reading frame 97
Alias_symbol (synonym)MGC14801
Other alias
HGNC (Hugo) LINC00467
LocusID (NCBI) 84791
Atlas_Id 56505
Location 1q32.3  [Link to chromosome band 1q32]
Location_base_pair Starts at 211382813 and ends at 211432536 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00467   28227
Cards
Entrez_Gene (NCBI)LINC00467  84791  long intergenic non-protein coding RNA 467
AliasesC1orf97
GeneCards (Weizmann)LINC00467
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:211382813-211432536 [Contig_View]  LINC00467 [Vega]
TCGA cBioPortalLINC00467
AceView (NCBI)LINC00467
Genatlas (Paris)LINC00467
WikiGenes84791
SOURCE (Princeton)LINC00467
Genetics Home Reference (NIH)LINC00467
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00467  -     chr1:211382813-211432536 +  1q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00467  -     1q32.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00467 - 1q32.3 [CytoView hg19]  LINC00467 - 1q32.3 [CytoView hg38]
Mapping of homologs : NCBILINC00467 [Mapview hg19]  LINC00467 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK130857 AK130858 BC005997 BP197632 BX382054
RefSeq transcript (Entrez)NM_032705
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00467
Cluster EST : UnigeneHs.523932 [ NCBI ]
CGAP (NCI)Hs.523932
Gene ExpressionLINC00467 [ NCBI-GEO ]   LINC00467 [ EBI - ARRAY_EXPRESS ]   LINC00467 [ SEEK ]   LINC00467 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00467 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84791
GTEX Portal (Tissue expression)LINC00467
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRT7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRT7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRT7
Splice isoforms : SwissVarQ9BRT7
PhosPhoSitePlusQ9BRT7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00467
DMDM Disease mutations84791
Blocks (Seattle)LINC00467
SuperfamilyQ9BRT7
Peptide AtlasQ9BRT7
HPRD17500
IPIIPI00872659   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRT7
IntAct (EBI)Q9BRT7
BioGRIDLINC00467
STRING (EMBL)LINC00467
ZODIACLINC00467
Ontologies - Pathways
QuickGOQ9BRT7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00467
Atlas of Cancer Signalling NetworkLINC00467
Wikipedia pathwaysLINC00467
Orthology - Evolution
OrthoDB84791
Phylogenetic Trees/Animal Genes : TreeFamLINC00467
HOVERGENQ9BRT7
HOGENOMQ9BRT7
Homologs : HomoloGeneLINC00467
Homology/Alignments : Family Browser (UCSC)LINC00467
Gene fusions - Rearrangements
Tumor Fusion PortalLINC00467
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00467 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00467
dbVarLINC00467
ClinVarLINC00467
1000_GenomesLINC00467 
Exome Variant ServerLINC00467
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP84791
Genomic Variants (DGV)LINC00467 [DGVbeta]
DECIPHERLINC00467 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00467 
Mutations
ICGC Data PortalLINC00467 
TCGA Data PortalLINC00467 
Broad Tumor PortalLINC00467
OASIS PortalLINC00467 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00467
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00467
DgiDB (Drug Gene Interaction Database)LINC00467
DoCM (Curated mutations)LINC00467 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00467 (select a term)
intoGenLINC00467
Cancer3DLINC00467(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC00467
MedgenLINC00467
Genetic Testing Registry LINC00467
NextProtQ9BRT7 [Medical]
TSGene84791
GENETestsLINC00467
Target ValidationLINC00467
Huge Navigator LINC00467 [HugePedia]
snp3D : Map Gene to Disease84791
BioCentury BCIQLINC00467
ClinGenLINC00467
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84791
Chemical/Pharm GKB GenePA142672481
Clinical trialLINC00467
Miscellaneous
canSAR (ICR)LINC00467 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00467
EVEXLINC00467
GoPubMedLINC00467
iHOPLINC00467
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 20:43:26 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.