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LINC00469 (long intergenic non-protein coding RNA 469)

Identity

Alias_namesC17orf54
chromosome 17 open reading frame 54
Alias_symbol (synonym)FLJ40319
Other alias
HGNC (Hugo) LINC00469
LocusID (NCBI) 283982
Atlas_Id 65437
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 71745409 and ends at 71824676 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00469   26863
Cards
Entrez_Gene (NCBI)LINC00469  283982  long intergenic non-protein coding RNA 469
AliasesC17orf54
GeneCards (Weizmann)LINC00469
Ensembl hg19 (Hinxton) [Gene_View]  chr17:71745409-71824676 [Contig_View]  LINC00469 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:71745409-71824676 [Contig_View]  LINC00469 [Vega]
TCGA cBioPortalLINC00469
AceView (NCBI)LINC00469
Genatlas (Paris)LINC00469
WikiGenes283982
SOURCE (Princeton)LINC00469
Genetics Home Reference (NIH)LINC00469
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00469  -     chr17:71745409-71824676 -  17q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00469  -     17q25.1   [Description]    (hg38-Dec_2013)
EnsemblLINC00469 - 17q25.1 [CytoView hg19]  LINC00469 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBILINC00469 [Mapview hg19]  LINC00469 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097638 BC101213 BC101214 BC101215 HG509423
RefSeq transcript (Entrez)NM_182564
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)LINC00469
Cluster EST : UnigeneHs.464079 [ NCBI ]
CGAP (NCI)Hs.464079
Gene ExpressionLINC00469 [ NCBI-GEO ]   LINC00469 [ EBI - ARRAY_EXPRESS ]   LINC00469 [ SEEK ]   LINC00469 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00469 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283982
GTEX Portal (Tissue expression)LINC00469
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7U9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7U9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7U9
Splice isoforms : SwissVarQ8N7U9
PhosPhoSitePlusQ8N7U9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00469
DMDM Disease mutations283982
Blocks (Seattle)LINC00469
SuperfamilyQ8N7U9
Peptide AtlasQ8N7U9
HPRD08277
IPIIPI00332433   IPI00828121   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7U9
IntAct (EBI)Q8N7U9
BioGRIDLINC00469
STRING (EMBL)LINC00469
ZODIACLINC00469
Ontologies - Pathways
QuickGOQ8N7U9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00469
Atlas of Cancer Signalling NetworkLINC00469
Wikipedia pathwaysLINC00469
Orthology - Evolution
OrthoDB283982
Phylogenetic Trees/Animal Genes : TreeFamLINC00469
HOVERGENQ8N7U9
HOGENOMQ8N7U9
Homologs : HomoloGeneLINC00469
Homology/Alignments : Family Browser (UCSC)LINC00469
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00469 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00469
dbVarLINC00469
ClinVarLINC00469
1000_GenomesLINC00469 
Exome Variant ServerLINC00469
ExAC (Exome Aggregation Consortium)LINC00469 (select the gene name)
Genetic variants : HAPMAP283982
Genomic Variants (DGV)LINC00469 [DGVbeta]
DECIPHER (Syndromes)17:71745409-71824676  
CONAN: Copy Number AnalysisLINC00469 
Mutations
ICGC Data PortalLINC00469 
TCGA Data PortalLINC00469 
Broad Tumor PortalLINC00469
OASIS PortalLINC00469 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00469
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch LINC00469
DgiDB (Drug Gene Interaction Database)LINC00469
DoCM (Curated mutations)LINC00469 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00469 (select a term)
intoGenLINC00469
Cancer3DLINC00469(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00469
Genetic Testing Registry LINC00469
NextProtQ8N7U9 [Medical]
TSGene283982
GENETestsLINC00469
Huge Navigator LINC00469 [HugePedia]
snp3D : Map Gene to Disease283982
BioCentury BCIQLINC00469
ClinGenLINC00469
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283982
Chemical/Pharm GKB GenePA142672237
Clinical trialLINC00469
Miscellaneous
canSAR (ICR)LINC00469 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00469
EVEXLINC00469
GoPubMedLINC00469
iHOPLINC00469
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:11:45 CET 2017

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