Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00470 (long intergenic non-protein coding RNA 470)

Identity

Alias_namesC18orf2
chromosome 18 open reading frame 2
Other alias
HGNC (Hugo) LINC00470
LocusID (NCBI) 56651
Atlas_Id 65438
Location 18p11.32  [Link to chromosome band 18p11]
Location_base_pair Starts at 1269823 and ends at 1359629 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00470   1225
Cards
Entrez_Gene (NCBI)LINC00470  56651  long intergenic non-protein coding RNA 470
AliasesC18orf2
GeneCards (Weizmann)LINC00470
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr18:1269823-1359629 [Contig_View]  LINC00470 [Vega]
TCGA cBioPortalLINC00470
AceView (NCBI)LINC00470
Genatlas (Paris)LINC00470
WikiGenes56651
SOURCE (Princeton)LINC00470
Genetics Home Reference (NIH)LINC00470
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00470  -     chr18:1269823-1359629 -  18p11.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00470  -     18p11.32   [Description]    (hg19-Feb_2009)
EnsemblLINC00470 - 18p11.32 [CytoView hg19]  LINC00470 - 18p11.32 [CytoView hg38]
Mapping of homologs : NCBILINC00470 [Mapview hg19]  LINC00470 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF295725 AF295726 AF295727 AF295728 AF295729
RefSeq transcript (Entrez)NM_031416
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00470
Cluster EST : UnigeneHs.541165 [ NCBI ]
CGAP (NCI)Hs.541165
Gene ExpressionLINC00470 [ NCBI-GEO ]   LINC00470 [ EBI - ARRAY_EXPRESS ]   LINC00470 [ SEEK ]   LINC00470 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00470 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56651
GTEX Portal (Tissue expression)LINC00470
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZP3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZP3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZP3
Splice isoforms : SwissVarQ9BZP3
PhosPhoSitePlusQ9BZP3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00470
DMDM Disease mutations56651
Blocks (Seattle)LINC00470
SuperfamilyQ9BZP3
Peptide AtlasQ9BZP3
IPIIPI00289169   IPI00889719   IPI00889778   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZP3
IntAct (EBI)Q9BZP3
BioGRID
STRING (EMBL)LINC00470
ZODIACLINC00470
Ontologies - Pathways
QuickGOQ9BZP3
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkLINC00470
Atlas of Cancer Signalling NetworkLINC00470
Wikipedia pathwaysLINC00470
Orthology - Evolution
OrthoDB56651
Phylogenetic Trees/Animal Genes : TreeFamLINC00470
HOVERGENQ9BZP3
HOGENOMQ9BZP3
Homologs : HomoloGeneLINC00470
Homology/Alignments : Family Browser (UCSC)LINC00470
Gene fusions - Rearrangements
Tumor Fusion PortalLINC00470
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00470 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00470
dbVarLINC00470
ClinVarLINC00470
1000_GenomesLINC00470 
Exome Variant ServerLINC00470
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP56651
Genomic Variants (DGV)LINC00470 [DGVbeta]
DECIPHERLINC00470 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00470 
Mutations
ICGC Data PortalLINC00470 
TCGA Data PortalLINC00470 
Broad Tumor PortalLINC00470
OASIS PortalLINC00470 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLINC00470  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLINC00470
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00470
DgiDB (Drug Gene Interaction Database)LINC00470
DoCM (Curated mutations)LINC00470 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00470 (select a term)
intoGenLINC00470
Cancer3DLINC00470(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC00470
MedgenLINC00470
Genetic Testing Registry LINC00470
NextProtQ9BZP3 [Medical]
TSGene56651
GENETestsLINC00470
Target ValidationLINC00470
Huge Navigator LINC00470 [HugePedia]
snp3D : Map Gene to Disease56651
BioCentury BCIQLINC00470
ClinGenLINC00470
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56651
Chemical/Pharm GKB GenePA25594
Clinical trialLINC00470
Miscellaneous
canSAR (ICR)LINC00470 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00470
EVEXLINC00470
GoPubMedLINC00470
iHOPLINC00470
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:37:32 CET 2017

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