Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00472 (long intergenic non-protein coding RNA 472)

Identity

Alias_namesC6orf155
chromosome 6 open reading frame 155
Alias_symbol (synonym)dJ288M22.3
FLJ13189
Other aliasP53RRA
HGNC (Hugo) LINC00472
LocusID (NCBI) 79940
Atlas_Id 55937
Location 6q13  [Link to chromosome band 6q13]
Location_base_pair Starts at 71407865 and ends at 71420745 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00472   21380
Cards
Entrez_Gene (NCBI)LINC00472  79940  long intergenic non-protein coding RNA 472
AliasesC6orf155; P53RRA
GeneCards (Weizmann)LINC00472
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:71407865-71420745 [Contig_View]  LINC00472 [Vega]
TCGA cBioPortalLINC00472
AceView (NCBI)LINC00472
Genatlas (Paris)LINC00472
WikiGenes79940
SOURCE (Princeton)LINC00472
Genetics Home Reference (NIH)LINC00472
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00472  -     chr6:71407865-71420745 -  6q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00472  -     6q13   [Description]    (hg19-Feb_2009)
EnsemblLINC00472 - 6q13 [CytoView hg19]  LINC00472 - 6q13 [CytoView hg38]
Mapping of homologs : NCBILINC00472 [Mapview hg19]  LINC00472 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI498652 AI674733 AI688494 AI808466 AI985403
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00472
Cluster EST : UnigeneHs.729593 [ NCBI ]
CGAP (NCI)Hs.729593
Gene ExpressionLINC00472 [ NCBI-GEO ]   LINC00472 [ EBI - ARRAY_EXPRESS ]   LINC00472 [ SEEK ]   LINC00472 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00472 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79940
GTEX Portal (Tissue expression)LINC00472
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H8W2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H8W2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H8W2
Splice isoforms : SwissVarQ9H8W2
PhosPhoSitePlusQ9H8W2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00472
DMDM Disease mutations79940
Blocks (Seattle)LINC00472
SuperfamilyQ9H8W2
Peptide AtlasQ9H8W2
HPRD12860
IPIIPI00303966   
Protein Interaction databases
DIP (DOE-UCLA)Q9H8W2
IntAct (EBI)Q9H8W2
BioGRIDLINC00472
STRING (EMBL)LINC00472
ZODIACLINC00472
Ontologies - Pathways
QuickGOQ9H8W2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00472
Atlas of Cancer Signalling NetworkLINC00472
Wikipedia pathwaysLINC00472
Orthology - Evolution
OrthoDB79940
Phylogenetic Trees/Animal Genes : TreeFamLINC00472
HOVERGENQ9H8W2
HOGENOMQ9H8W2
Homologs : HomoloGeneLINC00472
Homology/Alignments : Family Browser (UCSC)LINC00472
Gene fusions - Rearrangements
Fusion : QuiverLINC00472
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00472 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00472
dbVarLINC00472
ClinVarLINC00472
1000_GenomesLINC00472 
Exome Variant ServerLINC00472
Varsome BrowserLINC00472
Genetic variants : HAPMAP79940
Genomic Variants (DGV)LINC00472 [DGVbeta]
DECIPHERLINC00472 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00472 
Mutations
ICGC Data PortalLINC00472 
TCGA Data PortalLINC00472 
Broad Tumor PortalLINC00472
OASIS PortalLINC00472 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00472
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00472
DgiDB (Drug Gene Interaction Database)LINC00472
DoCM (Curated mutations)LINC00472 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00472 (select a term)
intoGenLINC00472
Cancer3DLINC00472(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC00472
MedgenLINC00472
Genetic Testing Registry LINC00472
NextProtQ9H8W2 [Medical]
TSGene79940
GENETestsLINC00472
Target ValidationLINC00472
Huge Navigator LINC00472 [HugePedia]
snp3D : Map Gene to Disease79940
BioCentury BCIQLINC00472
ClinGenLINC00472
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79940
Chemical/Pharm GKB GenePA134979543
Clinical trialLINC00472
Miscellaneous
canSAR (ICR)LINC00472 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00472
EVEXLINC00472
GoPubMedLINC00472
iHOPLINC00472
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:16:35 CET 2018

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