Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00473 (long intergenic non-protein coding RNA 473)

Identity

Other aliasC6orf176
LNC473
bA142J11.1
HGNC (Hugo) LINC00473
LocusID (NCBI) 90632
Atlas_Id 57282
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 165924048 and ends at 165988039 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00473   21160
Cards
Entrez_Gene (NCBI)LINC00473  90632  long intergenic non-protein coding RNA 473
AliasesC6orf176; LNC473; bA142J11.1
GeneCards (Weizmann)LINC00473
Ensembl hg19 (Hinxton)ENSG00000112541 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112541 [Gene_View]  ENSG00000112541 [Sequence]  chr6:165924048-165988039 [Contig_View]  LINC00473 [Vega]
ICGC DataPortalENSG00000112541
TCGA cBioPortalLINC00473
AceView (NCBI)LINC00473
Genatlas (Paris)LINC00473
WikiGenes90632
SOURCE (Princeton)LINC00473
Genetics Home Reference (NIH)LINC00473
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00473  -     chr6:165924048-165988039 -  6q27   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00473  -     6q27   [Description]    (hg19-Feb_2009)
EnsemblLINC00473 - 6q27 [CytoView hg19]  LINC00473 - 6q27 [CytoView hg38]
Mapping of homologs : NCBILINC00473 [Mapview hg19]  LINC00473 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK289375 BC008632 BC039614 BX647106 CB270066
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00473
Cluster EST : UnigeneHs.31917 [ NCBI ]
CGAP (NCI)Hs.31917
Alternative Splicing GalleryENSG00000112541
Gene ExpressionLINC00473 [ NCBI-GEO ]   LINC00473 [ EBI - ARRAY_EXPRESS ]   LINC00473 [ SEEK ]   LINC00473 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00473 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90632
GTEX Portal (Tissue expression)LINC00473
Human Protein AtlasENSG00000112541-LINC00473 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8K010   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8K010  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8K010
Splice isoforms : SwissVarA8K010
PhosPhoSitePlusA8K010
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00473
DMDM Disease mutations90632
Blocks (Seattle)LINC00473
SuperfamilyA8K010
Human Protein Atlas [tissue]ENSG00000112541-LINC00473 [tissue]
Peptide AtlasA8K010
IPIIPI00884955   
Protein Interaction databases
DIP (DOE-UCLA)A8K010
IntAct (EBI)A8K010
FunCoupENSG00000112541
BioGRIDLINC00473
STRING (EMBL)LINC00473
ZODIACLINC00473
Ontologies - Pathways
QuickGOA8K010
Ontology : AmiGOtranscription, DNA-templated  
Ontology : EGO-EBItranscription, DNA-templated  
NDEx NetworkLINC00473
Atlas of Cancer Signalling NetworkLINC00473
Wikipedia pathwaysLINC00473
Orthology - Evolution
OrthoDB90632
GeneTree (enSembl)ENSG00000112541
Phylogenetic Trees/Animal Genes : TreeFamLINC00473
HOVERGENA8K010
HOGENOMA8K010
Homologs : HomoloGeneLINC00473
Homology/Alignments : Family Browser (UCSC)LINC00473
Gene fusions - Rearrangements
Fusion : QuiverLINC00473
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00473 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00473
dbVarLINC00473
ClinVarLINC00473
1000_GenomesLINC00473 
Exome Variant ServerLINC00473
ExAC (Exome Aggregation Consortium)ENSG00000112541
GNOMAD BrowserENSG00000112541
Varsome BrowserLINC00473
Genetic variants : HAPMAP90632
Genomic Variants (DGV)LINC00473 [DGVbeta]
DECIPHERLINC00473 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00473 
Mutations
ICGC Data PortalLINC00473 
TCGA Data PortalLINC00473 
Broad Tumor PortalLINC00473
OASIS PortalLINC00473 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00473
BioMutasearch LINC00473
DgiDB (Drug Gene Interaction Database)LINC00473
DoCM (Curated mutations)LINC00473 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00473 (select a term)
intoGenLINC00473
Cancer3DLINC00473(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC00473
MedgenLINC00473
Genetic Testing Registry LINC00473
NextProtA8K010 [Medical]
TSGene90632
GENETestsLINC00473
Target ValidationLINC00473
Huge Navigator LINC00473 [HugePedia]
snp3D : Map Gene to Disease90632
BioCentury BCIQLINC00473
ClinGenLINC00473
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90632
Chemical/Pharm GKB GenePA134889928
Clinical trialLINC00473
Miscellaneous
canSAR (ICR)LINC00473 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00473
EVEXLINC00473
GoPubMedLINC00473
iHOPLINC00473
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:16:35 CET 2018

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