Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC00474 (long intergenic non-protein coding RNA 474)

Identity

Alias_namesC9orf27
chromosome 9 open reading frame 27
Alias_symbol (synonym)EST-YD1
Other alias
HGNC (Hugo) LINC00474
LocusID (NCBI) 58483
Atlas_Id 65442
Location 9q33.1  [Link to chromosome band 9q33]
Location_base_pair Starts at 115888166 and ends at 115925207 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00474   23367
Cards
Entrez_Gene (NCBI)LINC00474  58483  long intergenic non-protein coding RNA 474
AliasesC9orf27; EST-YD1
GeneCards (Weizmann)LINC00474
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:115888166-115925207 [Contig_View]  LINC00474 [Vega]
TCGA cBioPortalLINC00474
AceView (NCBI)LINC00474
Genatlas (Paris)LINC00474
WikiGenes58483
SOURCE (Princeton)LINC00474
Genetics Home Reference (NIH)LINC00474
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00474  -     chr9:115888166-115925207 -  9q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00474  -     9q33.1   [Description]    (hg19-Feb_2009)
EnsemblLINC00474 - 9q33.1 [CytoView hg19]  LINC00474 - 9q33.1 [CytoView hg38]
Mapping of homologs : NCBILINC00474 [Mapview hg19]  LINC00474 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB021923 BC104240 BC104241 BC112996 BC112997
RefSeq transcript (Entrez)NM_021208
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00474
Cluster EST : UnigeneHs.23367 [ NCBI ]
CGAP (NCI)Hs.23367
Gene ExpressionLINC00474 [ NCBI-GEO ]   LINC00474 [ EBI - ARRAY_EXPRESS ]   LINC00474 [ SEEK ]   LINC00474 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00474 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58483
GTEX Portal (Tissue expression)LINC00474
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2X8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2X8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2X8
Splice isoforms : SwissVarQ9P2X8
PhosPhoSitePlusQ9P2X8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00474
DMDM Disease mutations58483
Blocks (Seattle)LINC00474
SuperfamilyQ9P2X8
Peptide AtlasQ9P2X8
HPRD12951
IPIIPI00009651   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2X8
IntAct (EBI)Q9P2X8
BioGRIDLINC00474
STRING (EMBL)LINC00474
ZODIACLINC00474
Ontologies - Pathways
QuickGOQ9P2X8
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkLINC00474
Atlas of Cancer Signalling NetworkLINC00474
Wikipedia pathwaysLINC00474
Orthology - Evolution
OrthoDB58483
Phylogenetic Trees/Animal Genes : TreeFamLINC00474
HOVERGENQ9P2X8
HOGENOMQ9P2X8
Homologs : HomoloGeneLINC00474
Homology/Alignments : Family Browser (UCSC)LINC00474
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00474 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00474
dbVarLINC00474
ClinVarLINC00474
1000_GenomesLINC00474 
Exome Variant ServerLINC00474
ExAC (Exome Aggregation Consortium)LINC00474 (select the gene name)
Genetic variants : HAPMAP58483
Genomic Variants (DGV)LINC00474 [DGVbeta]
DECIPHERLINC00474 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00474 
Mutations
ICGC Data PortalLINC00474 
TCGA Data PortalLINC00474 
Broad Tumor PortalLINC00474
OASIS PortalLINC00474 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00474
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00474
DgiDB (Drug Gene Interaction Database)LINC00474
DoCM (Curated mutations)LINC00474 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00474 (select a term)
intoGenLINC00474
Cancer3DLINC00474(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00474
Genetic Testing Registry LINC00474
NextProtQ9P2X8 [Medical]
TSGene58483
GENETestsLINC00474
Target ValidationLINC00474
Huge Navigator LINC00474 [HugePedia]
snp3D : Map Gene to Disease58483
BioCentury BCIQLINC00474
ClinGenLINC00474
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58483
Chemical/Pharm GKB GenePA134935304
Clinical trialLINC00474
Miscellaneous
canSAR (ICR)LINC00474 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00474
EVEXLINC00474
GoPubMedLINC00474
iHOPLINC00474
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:56:38 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.