Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00476 (long intergenic non-protein coding RNA 476)

Identity

Alias_namesC9orf130
chromosome 9 open reading frame 130
Other aliasNAG11
NAG12
HGNC (Hugo) LINC00476
LocusID (NCBI) 100128782
Atlas_Id 65444
Location 9q22.32  [Link to chromosome band 9q22]
Location_base_pair Starts at 95870284 and ends at 95875977 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LINC00476 (9q22.32) / PIK3IP1 (22q12.2)LINC00476 (9q22.32) / RAD51AP1 (12p13.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00476   27858
Cards
Entrez_Gene (NCBI)LINC00476  100128782  long intergenic non-protein coding RNA 476
AliasesC9orf130; NAG11; NAG12
GeneCards (Weizmann)LINC00476
Ensembl hg19 (Hinxton)ENSG00000175611 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175611 [Gene_View]  chr9:95870284-95875977 [Contig_View]  LINC00476 [Vega]
ICGC DataPortalENSG00000175611
TCGA cBioPortalLINC00476
AceView (NCBI)LINC00476
Genatlas (Paris)LINC00476
WikiGenes100128782
SOURCE (Princeton)LINC00476
Genetics Home Reference (NIH)LINC00476
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00476  -     chr9:95870284-95875977 -  9q22.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00476  -     9q22.32   [Description]    (hg19-Feb_2009)
EnsemblLINC00476 - 9q22.32 [CytoView hg19]  LINC00476 - 9q22.32 [CytoView hg38]
Mapping of homologs : NCBILINC00476 [Mapview hg19]  LINC00476 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF170307 AF194971 AK092137 AK092145 AL389954
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00476
Cluster EST : UnigeneHs.494549 [ NCBI ]
CGAP (NCI)Hs.494549
Alternative Splicing GalleryENSG00000175611
Gene ExpressionLINC00476 [ NCBI-GEO ]   LINC00476 [ EBI - ARRAY_EXPRESS ]   LINC00476 [ SEEK ]   LINC00476 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00476 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100128782
GTEX Portal (Tissue expression)LINC00476
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WZB0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WZB0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WZB0
Splice isoforms : SwissVarQ8WZB0
PhosPhoSitePlusQ8WZB0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00476
DMDM Disease mutations100128782
Blocks (Seattle)LINC00476
SuperfamilyQ8WZB0
Human Protein AtlasENSG00000175611
Peptide AtlasQ8WZB0
IPIIPI00103926   IPI00103898   
Protein Interaction databases
DIP (DOE-UCLA)Q8WZB0
IntAct (EBI)Q8WZB0
FunCoupENSG00000175611
BioGRIDLINC00476
STRING (EMBL)LINC00476
ZODIACLINC00476
Ontologies - Pathways
QuickGOQ8WZB0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00476
Atlas of Cancer Signalling NetworkLINC00476
Wikipedia pathwaysLINC00476
Orthology - Evolution
OrthoDB100128782
GeneTree (enSembl)ENSG00000175611
Phylogenetic Trees/Animal Genes : TreeFamLINC00476
HOVERGENQ8WZB0
HOGENOMQ8WZB0
Homologs : HomoloGeneLINC00476
Homology/Alignments : Family Browser (UCSC)LINC00476
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00476 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00476
dbVarLINC00476
ClinVarLINC00476
1000_GenomesLINC00476 
Exome Variant ServerLINC00476
ExAC (Exome Aggregation Consortium)LINC00476 (select the gene name)
Genetic variants : HAPMAP100128782
Genomic Variants (DGV)LINC00476 [DGVbeta]
DECIPHERLINC00476 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00476 
Mutations
ICGC Data PortalLINC00476 
TCGA Data PortalLINC00476 
Broad Tumor PortalLINC00476
OASIS PortalLINC00476 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00476
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00476
DgiDB (Drug Gene Interaction Database)LINC00476
DoCM (Curated mutations)LINC00476 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00476 (select a term)
intoGenLINC00476
Cancer3DLINC00476(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00476
Genetic Testing Registry LINC00476
NextProtQ8WZB0 [Medical]
TSGene100128782
GENETestsLINC00476
Target ValidationLINC00476
Huge Navigator LINC00476 [HugePedia]
snp3D : Map Gene to Disease100128782
BioCentury BCIQLINC00476
ClinGenLINC00476
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100128782
Chemical/Pharm GKB GenePA134933990
Clinical trialLINC00476
Miscellaneous
canSAR (ICR)LINC00476 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00476
EVEXLINC00476
GoPubMedLINC00476
iHOPLINC00476
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:56:38 CEST 2017

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