Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC00477 (long intergenic non-protein coding RNA 477)

Identity

Alias (NCBI)C12orf67
FAM191B
HGNC (Hugo) LINC00477
HGNC Alias symbFLJ32894
FAM191B
HGNC Alias namefamily with sequence similarity 191, member B
HGNC Previous nameC12orf67
HGNC Previous namechromosome 12 open reading frame 67
LocusID (NCBI) 144360
Atlas_Id 65445
Location 12p12.1  [Link to chromosome band 12p12]
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LINC00477   26557
Cards
Entrez_Gene (NCBI)LINC00477    long intergenic non-protein coding RNA 477
AliasesC12orf67; FAM191B
GeneCards (Weizmann)LINC00477
Ensembl hg19 (Hinxton)ENSG00000197503 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197503 [Gene_View]  ENSG00000197503 [Sequence]  - [Contig_View]  LINC00477 [Vega]
ICGC DataPortalENSG00000197503
TCGA cBioPortalLINC00477
AceView (NCBI)LINC00477
Genatlas (Paris)LINC00477
SOURCE (Princeton)LINC00477
Genetics Home Reference (NIH)LINC00477
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00477  -  
GoldenPath hg19 (UCSC)LINC00477  -  
GoldenPathLINC00477 - [CytoView hg19]  LINC00477 - [CytoView hg38]
ImmunoBaseENSG00000197503
genome Data Viewer NCBILINC00477 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK057456 BC104436 BC104437
RefSeq transcript (Entrez)NM_144667
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00477
Alternative Splicing GalleryENSG00000197503
Gene ExpressionLINC00477 [ NCBI-GEO ]   LINC00477 [ EBI - ARRAY_EXPRESS ]   LINC00477 [ SEEK ]   LINC00477 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00477 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00477 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144360
GTEX Portal (Tissue expression)LINC00477
Human Protein AtlasENSG00000197503-LINC00477 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96M19   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96M19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96M19
Splice isoforms : SwissVarQ96M19
PhosPhoSitePlusQ96M19
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00477
Blocks (Seattle)LINC00477
SuperfamilyQ96M19
Human Protein Atlas [tissue]ENSG00000197503-LINC00477 [tissue]
Peptide AtlasQ96M19
HPRD08738
IPIIPI00065193   IPI00847311   
Protein Interaction databases
DIP (DOE-UCLA)Q96M19
IntAct (EBI)Q96M19
BioGRIDLINC00477
STRING (EMBL)LINC00477
ZODIACLINC00477
Ontologies - Pathways
QuickGOQ96M19
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkLINC00477
Atlas of Cancer Signalling NetworkLINC00477
Wikipedia pathwaysLINC00477
Orthology - Evolution
OrthoDB144360
GeneTree (enSembl)ENSG00000197503
Phylogenetic Trees/Animal Genes : TreeFamLINC00477
HOGENOMQ96M19
Homologs : HomoloGeneLINC00477
Homology/Alignments : Family Browser (UCSC)LINC00477
Gene fusions - Rearrangements
Fusion : QuiverLINC00477
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00477 [hg38]
dbVarLINC00477
ClinVarLINC00477
MonarchLINC00477
1000_GenomesLINC00477 
Exome Variant ServerLINC00477
GNOMAD BrowserENSG00000197503
Varsome BrowserLINC00477
Genomic Variants (DGV)LINC00477 [DGVbeta]
DECIPHERLINC00477 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00477 
Mutations
ICGC Data PortalLINC00477 
TCGA Data PortalLINC00477 
Broad Tumor PortalLINC00477
OASIS PortalLINC00477 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00477
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00477
DgiDB (Drug Gene Interaction Database)LINC00477
DoCM (Curated mutations)LINC00477 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00477 (select a term)
intoGenLINC00477
Cancer3DLINC00477(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC00477
MedgenLINC00477
Genetic Testing Registry LINC00477
NextProtQ96M19 [Medical]
GENETestsLINC00477
Target ValidationLINC00477
Huge Navigator LINC00477 [HugePedia]
ClinGenLINC00477
Clinical trials, drugs, therapy
MyCancerGenomeLINC00477
Protein Interactions : CTD
Pharm GKB GenePA162377985
Clinical trialLINC00477
Miscellaneous
canSAR (ICR)LINC00477 (select the gene name)
HarmonizomeLINC00477
DataMed IndexLINC00477
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00477
EVEXLINC00477
GoPubMedLINC00477
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:00:29 CET 2020
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