Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00477 (long intergenic non-protein coding RNA 477)

Identity

Alias_namesC12orf67
chromosome 12 open reading frame 67
Alias_symbol (synonym)FLJ32894
FAM191B
Other alias
HGNC (Hugo) LINC00477
LocusID (NCBI) 144360
Atlas_Id 65445
Location 12p12.1  [Link to chromosome band 12p12]
Location_base_pair Starts at 24566964 and ends at 24584168 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00477   26557
Cards
Entrez_Gene (NCBI)LINC00477  144360  long intergenic non-protein coding RNA 477
AliasesC12orf67; FAM191B
GeneCards (Weizmann)LINC00477
Ensembl hg19 (Hinxton)ENSG00000197503 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197503 [Gene_View]  chr12:24566964-24584168 [Contig_View]  LINC00477 [Vega]
ICGC DataPortalENSG00000197503
TCGA cBioPortalLINC00477
AceView (NCBI)LINC00477
Genatlas (Paris)LINC00477
WikiGenes144360
SOURCE (Princeton)LINC00477
Genetics Home Reference (NIH)LINC00477
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00477  -     chr12:24566964-24584168 -  12p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00477  -     12p12.1   [Description]    (hg19-Feb_2009)
EnsemblLINC00477 - 12p12.1 [CytoView hg19]  LINC00477 - 12p12.1 [CytoView hg38]
Mapping of homologs : NCBILINC00477 [Mapview hg19]  LINC00477 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057456 BC104436 BC104437
RefSeq transcript (Entrez)NM_144667
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00477
Cluster EST : UnigeneHs.350668 [ NCBI ]
CGAP (NCI)Hs.350668
Alternative Splicing GalleryENSG00000197503
Gene ExpressionLINC00477 [ NCBI-GEO ]   LINC00477 [ EBI - ARRAY_EXPRESS ]   LINC00477 [ SEEK ]   LINC00477 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00477 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144360
GTEX Portal (Tissue expression)LINC00477
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96M19   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96M19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96M19
Splice isoforms : SwissVarQ96M19
PhosPhoSitePlusQ96M19
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00477
DMDM Disease mutations144360
Blocks (Seattle)LINC00477
SuperfamilyQ96M19
Human Protein AtlasENSG00000197503
Peptide AtlasQ96M19
HPRD08738
IPIIPI00065193   IPI00847311   
Protein Interaction databases
DIP (DOE-UCLA)Q96M19
IntAct (EBI)Q96M19
FunCoupENSG00000197503
BioGRIDLINC00477
STRING (EMBL)LINC00477
ZODIACLINC00477
Ontologies - Pathways
QuickGOQ96M19
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkLINC00477
Atlas of Cancer Signalling NetworkLINC00477
Wikipedia pathwaysLINC00477
Orthology - Evolution
OrthoDB144360
GeneTree (enSembl)ENSG00000197503
Phylogenetic Trees/Animal Genes : TreeFamLINC00477
HOVERGENQ96M19
HOGENOMQ96M19
Homologs : HomoloGeneLINC00477
Homology/Alignments : Family Browser (UCSC)LINC00477
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00477 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00477
dbVarLINC00477
ClinVarLINC00477
1000_GenomesLINC00477 
Exome Variant ServerLINC00477
ExAC (Exome Aggregation Consortium)LINC00477 (select the gene name)
Genetic variants : HAPMAP144360
Genomic Variants (DGV)LINC00477 [DGVbeta]
DECIPHERLINC00477 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00477 
Mutations
ICGC Data PortalLINC00477 
TCGA Data PortalLINC00477 
Broad Tumor PortalLINC00477
OASIS PortalLINC00477 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00477
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00477
DgiDB (Drug Gene Interaction Database)LINC00477
DoCM (Curated mutations)LINC00477 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00477 (select a term)
intoGenLINC00477
Cancer3DLINC00477(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00477
Genetic Testing Registry LINC00477
NextProtQ96M19 [Medical]
TSGene144360
GENETestsLINC00477
Target ValidationLINC00477
Huge Navigator LINC00477 [HugePedia]
snp3D : Map Gene to Disease144360
BioCentury BCIQLINC00477
ClinGenLINC00477
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD144360
Chemical/Pharm GKB GenePA162377985
Clinical trialLINC00477
Miscellaneous
canSAR (ICR)LINC00477 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00477
EVEXLINC00477
GoPubMedLINC00477
iHOPLINC00477
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:13:11 CEST 2017

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