Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00479 (long intergenic non-protein coding RNA 479)

Identity

Alias_namesC21orf129
chromosome 21 open reading frame 129
Alias_symbol (synonym)PRED76
FLJ32835
Other alias
HGNC (Hugo) LINC00479
LocusID (NCBI) 150135
Atlas_Id 65446
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 41711520 and ends at 41715775 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00479   19727
Cards
Entrez_Gene (NCBI)LINC00479  150135  long intergenic non-protein coding RNA 479
AliasesC21orf129; PRED76
GeneCards (Weizmann)LINC00479
Ensembl hg19 (Hinxton)ENSG00000236384 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236384 [Gene_View]  chr21:41711520-41715775 [Contig_View]  LINC00479 [Vega]
ICGC DataPortalENSG00000236384
TCGA cBioPortalLINC00479
AceView (NCBI)LINC00479
Genatlas (Paris)LINC00479
WikiGenes150135
SOURCE (Princeton)LINC00479
Genetics Home Reference (NIH)LINC00479
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00479  -     chr21:41711520-41715775 -  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00479  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00479 - 21q22.3 [CytoView hg19]  LINC00479 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBILINC00479 [Mapview hg19]  LINC00479 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057397 BC128197 BC128198
RefSeq transcript (Entrez)NM_152506
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00479
Cluster EST : UnigeneHs.350679 [ NCBI ]
CGAP (NCI)Hs.350679
Alternative Splicing GalleryENSG00000236384
Gene ExpressionLINC00479 [ NCBI-GEO ]   LINC00479 [ EBI - ARRAY_EXPRESS ]   LINC00479 [ SEEK ]   LINC00479 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00479 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150135
GTEX Portal (Tissue expression)LINC00479
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96M42   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96M42  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96M42
Splice isoforms : SwissVarQ96M42
PhosPhoSitePlusQ96M42
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00479
DMDM Disease mutations150135
Blocks (Seattle)LINC00479
SuperfamilyQ96M42
Human Protein AtlasENSG00000236384
Peptide AtlasQ96M42
HPRD10741
IPIIPI00065280   
Protein Interaction databases
DIP (DOE-UCLA)Q96M42
IntAct (EBI)Q96M42
FunCoupENSG00000236384
BioGRIDLINC00479
STRING (EMBL)LINC00479
ZODIACLINC00479
Ontologies - Pathways
QuickGOQ96M42
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00479
Atlas of Cancer Signalling NetworkLINC00479
Wikipedia pathwaysLINC00479
Orthology - Evolution
OrthoDB150135
GeneTree (enSembl)ENSG00000236384
Phylogenetic Trees/Animal Genes : TreeFamLINC00479
HOVERGENQ96M42
HOGENOMQ96M42
Homologs : HomoloGeneLINC00479
Homology/Alignments : Family Browser (UCSC)LINC00479
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00479 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00479
dbVarLINC00479
ClinVarLINC00479
1000_GenomesLINC00479 
Exome Variant ServerLINC00479
ExAC (Exome Aggregation Consortium)LINC00479 (select the gene name)
Genetic variants : HAPMAP150135
Genomic Variants (DGV)LINC00479 [DGVbeta]
DECIPHERLINC00479 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00479 
Mutations
ICGC Data PortalLINC00479 
TCGA Data PortalLINC00479 
Broad Tumor PortalLINC00479
OASIS PortalLINC00479 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00479
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00479
DgiDB (Drug Gene Interaction Database)LINC00479
DoCM (Curated mutations)LINC00479 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00479 (select a term)
intoGenLINC00479
Cancer3DLINC00479(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00479
Genetic Testing Registry LINC00479
NextProtQ96M42 [Medical]
TSGene150135
GENETestsLINC00479
Target ValidationLINC00479
Huge Navigator LINC00479 [HugePedia]
snp3D : Map Gene to Disease150135
BioCentury BCIQLINC00479
ClinGenLINC00479
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150135
Chemical/Pharm GKB GenePA134918742
Clinical trialLINC00479
Miscellaneous
canSAR (ICR)LINC00479 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00479
EVEXLINC00479
GoPubMedLINC00479
iHOPLINC00479
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:13:11 CEST 2017

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