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LINC00482 (long intergenic non-protein coding RNA 482)

Identity

Alias_namesC17orf55
chromosome 17 open reading frame 55
Alias_symbol (synonym)FLJ39421
Other alias
HGNC (Hugo) LINC00482
LocusID (NCBI) 284185
Atlas_Id 65447
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 81302824 and ends at 81309248 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00482   26816
Cards
Entrez_Gene (NCBI)LINC00482  284185  long intergenic non-protein coding RNA 482
AliasesC17orf55
GeneCards (Weizmann)LINC00482
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:81302824-81309248 [Contig_View]  LINC00482 [Vega]
TCGA cBioPortalLINC00482
AceView (NCBI)LINC00482
Genatlas (Paris)LINC00482
WikiGenes284185
SOURCE (Princeton)LINC00482
Genetics Home Reference (NIH)LINC00482
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00482  -     chr17:81302824-81309248 -  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00482  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00482 - 17q25.3 [CytoView hg19]  LINC00482 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBILINC00482 [Mapview hg19]  LINC00482 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096740 BC108932 BC108933
RefSeq transcript (Entrez)NM_178519
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00482
Cluster EST : UnigeneHs.631762 [ NCBI ]
CGAP (NCI)Hs.631762
Gene ExpressionLINC00482 [ NCBI-GEO ]   LINC00482 [ EBI - ARRAY_EXPRESS ]   LINC00482 [ SEEK ]   LINC00482 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00482 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284185
GTEX Portal (Tissue expression)LINC00482
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8I6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8I6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8I6
Splice isoforms : SwissVarQ8N8I6
PhosPhoSitePlusQ8N8I6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00482
DMDM Disease mutations284185
Blocks (Seattle)LINC00482
SuperfamilyQ8N8I6
Peptide AtlasQ8N8I6
HPRD08254
IPIIPI00167484   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8I6
IntAct (EBI)Q8N8I6
BioGRIDLINC00482
STRING (EMBL)LINC00482
ZODIACLINC00482
Ontologies - Pathways
QuickGOQ8N8I6
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkLINC00482
Atlas of Cancer Signalling NetworkLINC00482
Wikipedia pathwaysLINC00482
Orthology - Evolution
OrthoDB284185
Phylogenetic Trees/Animal Genes : TreeFamLINC00482
HOVERGENQ8N8I6
HOGENOMQ8N8I6
Homologs : HomoloGeneLINC00482
Homology/Alignments : Family Browser (UCSC)LINC00482
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00482 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00482
dbVarLINC00482
ClinVarLINC00482
1000_GenomesLINC00482 
Exome Variant ServerLINC00482
ExAC (Exome Aggregation Consortium)LINC00482 (select the gene name)
Genetic variants : HAPMAP284185
Genomic Variants (DGV)LINC00482 [DGVbeta]
DECIPHERLINC00482 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00482 
Mutations
ICGC Data PortalLINC00482 
TCGA Data PortalLINC00482 
Broad Tumor PortalLINC00482
OASIS PortalLINC00482 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00482
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00482
DgiDB (Drug Gene Interaction Database)LINC00482
DoCM (Curated mutations)LINC00482 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00482 (select a term)
intoGenLINC00482
Cancer3DLINC00482(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00482
Genetic Testing Registry LINC00482
NextProtQ8N8I6 [Medical]
TSGene284185
GENETestsLINC00482
Target ValidationLINC00482
Huge Navigator LINC00482 [HugePedia]
snp3D : Map Gene to Disease284185
BioCentury BCIQLINC00482
ClinGenLINC00482
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284185
Chemical/Pharm GKB GenePA142672238
Clinical trialLINC00482
Miscellaneous
canSAR (ICR)LINC00482 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00482
EVEXLINC00482
GoPubMedLINC00482
iHOPLINC00482
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:56:39 CEST 2017

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