Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00483 (long intergenic non-protein coding RNA 483)

Identity

Alias_namesC17orf73
chromosome 17 open reading frame 73
Alias_symbol (synonym)FLJ20694
Other alias
HGNC (Hugo) LINC00483
LocusID (NCBI) 55018
Atlas_Id 65448
Location 17q21.33  [Link to chromosome band 17q21]
Location_base_pair Starts at 50757398 and ends at 50767516 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LINC00483 (17q21.33) / LINC00483 (17q21.33)LINC00483 (17q21.33) / MAGI1 (3p14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00483   26080
Cards
Entrez_Gene (NCBI)LINC00483  55018  long intergenic non-protein coding RNA 483
AliasesC17orf73
GeneCards (Weizmann)LINC00483
Ensembl hg19 (Hinxton)ENSG00000167117 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167117 [Gene_View]  chr17:50757398-50767516 [Contig_View]  LINC00483 [Vega]
ICGC DataPortalENSG00000167117
TCGA cBioPortalLINC00483
AceView (NCBI)LINC00483
Genatlas (Paris)LINC00483
WikiGenes55018
SOURCE (Princeton)LINC00483
Genetics Home Reference (NIH)LINC00483
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00483  -     chr17:50757398-50767516 -  17q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00483  -     17q21.33   [Description]    (hg19-Feb_2009)
EnsemblLINC00483 - 17q21.33 [CytoView hg19]  LINC00483 - 17q21.33 [CytoView hg38]
Mapping of homologs : NCBILINC00483 [Mapview hg19]  LINC00483 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000670 AK000701 AK222717 AK310037 BC128165
RefSeq transcript (Entrez)NM_017928
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00483
Cluster EST : UnigeneHs.389460 [ NCBI ]
CGAP (NCI)Hs.389460
Alternative Splicing GalleryENSG00000167117
Gene ExpressionLINC00483 [ NCBI-GEO ]   LINC00483 [ EBI - ARRAY_EXPRESS ]   LINC00483 [ SEEK ]   LINC00483 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00483 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55018
GTEX Portal (Tissue expression)LINC00483
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53H64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53H64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53H64
Splice isoforms : SwissVarQ53H64
PhosPhoSitePlusQ53H64
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00483
DMDM Disease mutations55018
Blocks (Seattle)LINC00483
SuperfamilyQ53H64
Human Protein AtlasENSG00000167117
Peptide AtlasQ53H64
HPRD07942
IPIIPI00016737   IPI00884030   
Protein Interaction databases
DIP (DOE-UCLA)Q53H64
IntAct (EBI)Q53H64
FunCoupENSG00000167117
BioGRIDLINC00483
STRING (EMBL)LINC00483
ZODIACLINC00483
Ontologies - Pathways
QuickGOQ53H64
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00483
Atlas of Cancer Signalling NetworkLINC00483
Wikipedia pathwaysLINC00483
Orthology - Evolution
OrthoDB55018
GeneTree (enSembl)ENSG00000167117
Phylogenetic Trees/Animal Genes : TreeFamLINC00483
HOVERGENQ53H64
HOGENOMQ53H64
Homologs : HomoloGeneLINC00483
Homology/Alignments : Family Browser (UCSC)LINC00483
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00483 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00483
dbVarLINC00483
ClinVarLINC00483
1000_GenomesLINC00483 
Exome Variant ServerLINC00483
ExAC (Exome Aggregation Consortium)LINC00483 (select the gene name)
Genetic variants : HAPMAP55018
Genomic Variants (DGV)LINC00483 [DGVbeta]
DECIPHERLINC00483 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00483 
Mutations
ICGC Data PortalLINC00483 
TCGA Data PortalLINC00483 
Broad Tumor PortalLINC00483
OASIS PortalLINC00483 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00483
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00483
DgiDB (Drug Gene Interaction Database)LINC00483
DoCM (Curated mutations)LINC00483 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00483 (select a term)
intoGenLINC00483
Cancer3DLINC00483(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00483
Genetic Testing Registry LINC00483
NextProtQ53H64 [Medical]
TSGene55018
GENETestsLINC00483
Target ValidationLINC00483
Huge Navigator LINC00483 [HugePedia]
snp3D : Map Gene to Disease55018
BioCentury BCIQLINC00483
ClinGenLINC00483
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55018
Chemical/Pharm GKB GenePA142672221
Clinical trialLINC00483
Miscellaneous
canSAR (ICR)LINC00483 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00483
EVEXLINC00483
GoPubMedLINC00483
iHOPLINC00483
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:19:35 CEST 2017

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