Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC00488 (long intergenic non-protein coding RNA 488)

Identity

Alias_namesC3orf66
chromosome 3 open reading frame 66
Alias_symbol (synonym)FLJ41232
Other alias
HGNC (Hugo) LINC00488
LocusID (NCBI) 677779
Atlas_Id 65452
Location 3q13.13  [Link to chromosome band 3q13]
Location_base_pair Starts at 109178165 and ends at 109185257 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00488   32675
Cards
Entrez_Gene (NCBI)LINC00488  677779  long intergenic non-protein coding RNA 488
AliasesC3orf66
GeneCards (Weizmann)LINC00488
Ensembl hg19 (Hinxton)ENSG00000214381 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214381 [Gene_View]  chr3:109178165-109185257 [Contig_View]  LINC00488 [Vega]
ICGC DataPortalENSG00000214381
TCGA cBioPortalLINC00488
AceView (NCBI)LINC00488
Genatlas (Paris)LINC00488
WikiGenes677779
SOURCE (Princeton)LINC00488
Genetics Home Reference (NIH)LINC00488
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00488  -     chr3:109178165-109185257 +  3q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00488  -     3q13.13   [Description]    (hg19-Feb_2009)
EnsemblLINC00488 - 3q13.13 [CytoView hg19]  LINC00488 - 3q13.13 [CytoView hg38]
Mapping of homologs : NCBILINC00488 [Mapview hg19]  LINC00488 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123226 BC022563 CX865329
RefSeq transcript (Entrez)NM_001040054
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00488
Cluster EST : UnigeneHs.618669 [ NCBI ]
CGAP (NCI)Hs.618669
Alternative Splicing GalleryENSG00000214381
Gene ExpressionLINC00488 [ NCBI-GEO ]   LINC00488 [ EBI - ARRAY_EXPRESS ]   LINC00488 [ SEEK ]   LINC00488 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00488 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)677779
GTEX Portal (Tissue expression)LINC00488
Human Protein AtlasENSG00000214381-LINC00488 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00488
DMDM Disease mutations677779
Blocks (Seattle)LINC00488
Human Protein Atlas [tissue]ENSG00000214381-LINC00488 [tissue]
IPIIPI00446725   
Protein Interaction databases
FunCoupENSG00000214381
BioGRIDLINC00488
STRING (EMBL)LINC00488
ZODIACLINC00488
Ontologies - Pathways
Huge Navigator LINC00488 [HugePedia]
snp3D : Map Gene to Disease677779
BioCentury BCIQLINC00488
ClinGenLINC00488
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD677779
Chemical/Pharm GKB Geoe<+TD>PA144596508
Clinical trialLINC00488
Miscellaneous
canSAR (ICR)LINC00488 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00488
EVEXLINC00488
GoPubMedLINC00488
iHOPLINC00488
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:07:48 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.