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LINC00493 (long intergenic non-protein coding RNA 493)

Identity

Alias_symbol (synonym)LOC388789
Other alias-
HGNC (Hugo) LINC00493
LocusID (NCBI) 388789
Atlas_Id 65456
Location 20p11.23  [Link to chromosome band 20p11]
Location_base_pair Starts at 18548073 and ends at 18550203 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LINC00493 (20p11.23) / DTD1 (20p11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00493   43430
Cards
Entrez_Gene (NCBI)LINC00493  388789  long intergenic non-protein coding RNA 493
Aliases
GeneCards (Weizmann)LINC00493
Ensembl hg19 (Hinxton)ENSG00000232388 [Gene_View]  chr20:18548073-18550203 [Contig_View]  LINC00493 [Vega]
Ensembl hg38 (Hinxton)ENSG00000232388 [Gene_View]  chr20:18548073-18550203 [Contig_View]  LINC00493 [Vega]
ICGC DataPortalENSG00000232388
TCGA cBioPortalLINC00493
AceView (NCBI)LINC00493
Genatlas (Paris)LINC00493
WikiGenes388789
SOURCE (Princeton)LINC00493
Genetics Home Reference (NIH)LINC00493
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00493  -     chr20:18548073-18550203 +  20p11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00493  -     20p11.23   [Description]    (hg38-Dec_2013)
EnsemblLINC00493 - 20p11.23 [CytoView hg19]  LINC00493 - 20p11.23 [CytoView hg38]
Mapping of homologs : NCBILINC00493 [Mapview hg19]  LINC00493 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF147354 AK024594 BC015983 BC039422 BC092494
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011387 NW_004929416
Consensus coding sequences : CCDS (NCBI)LINC00493
Cluster EST : UnigeneHs.349092 [ NCBI ]
CGAP (NCI)Hs.349092
Alternative Splicing GalleryENSG00000232388
Gene ExpressionLINC00493 [ NCBI-GEO ]   LINC00493 [ EBI - ARRAY_EXPRESS ]   LINC00493 [ SEEK ]   LINC00493 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00493 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)388789
GTEX Portal (Tissue expression)LINC00493
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00493
DMDM Disease mutations388789
Blocks (Seattle)LINC00493
Human Protein AtlasENSG00000232388
IPIIPI00847596   
Protein Interaction databases
FunCoupENSG00000232388
BioGRIDLINC00493
STRING (EMBL)LINC00493
ZODIACLINC00493
Ontologies - Pathways
Huge Navigator LINC00493 [HugePedia]
snp3D : Map Gene to Disease388789
BioCentury BCIQLINC00493
ClinGenLINC00493
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388789
Clinical trialLINC00493
Miscellaneous
canSAR (ICR)LINC00493 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00493
EVEXLINC00493
GoPubMedLINC00493
iHOPLINC00493
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:11:49 CET 2017

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