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LINC00499 (long intergenic non-protein coding RNA 499)

Identity

Other alias-
HGNC (Hugo) LINC00499
LocusID (NCBI) 100874047
Atlas_Id 65458
Location 4q28.3  [Link to chromosome band 4q28]
Location_base_pair Starts at 138309711 and ends at 138424344 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00499   43436
Cards
Entrez_Gene (NCBI)LINC00499  100874047  long intergenic non-protein coding RNA 499
Aliases
GeneCards (Weizmann)LINC00499
Ensembl hg19 (Hinxton)ENSG00000251372 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251372 [Gene_View]  chr4:138309711-138424344 [Contig_View]  LINC00499 [Vega]
ICGC DataPortalENSG00000251372
TCGA cBioPortalLINC00499
AceView (NCBI)LINC00499
Genatlas (Paris)LINC00499
WikiGenes100874047
SOURCE (Princeton)LINC00499
Genetics Home Reference (NIH)LINC00499
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00499  -     chr4:138309711-138424344 +  4q28.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00499  -     4q28.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00499 - 4q28.3 [CytoView hg19]  LINC00499 - 4q28.3 [CytoView hg38]
Mapping of homologs : NCBILINC00499 [Mapview hg19]  LINC00499 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DA139039 DA150093 DA157986 DA412005
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00499
Cluster EST : UnigeneHs.570848 [ NCBI ]
CGAP (NCI)Hs.570848
Alternative Splicing GalleryENSG00000251372
Gene ExpressionLINC00499 [ NCBI-GEO ]   LINC00499 [ EBI - ARRAY_EXPRESS ]   LINC00499 [ SEEK ]   LINC00499 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00499 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874047
GTEX Portal (Tissue expression)LINC00499
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00499
DMDM Disease mutations100874047
Blocks (Seattle)LINC00499
Human Protein AtlasENSG00000251372
Protein Interaction databases
FunCoupENSG00000251372
BioGRIDLINC00499
STRING (EMBL)LINC00499
ZODIACLINC00499
Ontologies - Pathways
Huge Navigator LINC00499 [HugePedia]
snp3D : Map Gene to Disease100874047
BioCentury BCIQLINC00499
ClinGenLINC00499
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874047
Clinical trialLINC00499
Miscellaneous
canSAR (ICR)LINC00499 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00499
EVEXLINC00499
GoPubMedLINC00499
iHOPLINC00499
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:56:42 CEST 2017

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