Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC00502 (long intergenic non-protein coding RNA 502)


Alias (NCBI)-
HGNC (Hugo) LINC00502
LocusID (NCBI) 100874184
Atlas_Id 65460
Location 10q23.31  [Link to chromosome band 10q23]
Location_base_pair Starts at 91045808 and ends at 91062159 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(10;10)(q23;q24) LINC00502/TLX1
t(10;10)(q23;q24) LINC00502/TLX1

External links

HGNC (Hugo)LINC00502   43442
Entrez_Gene (NCBI)LINC00502    long intergenic non-protein coding RNA 502
GeneCards (Weizmann)LINC00502
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr10:91045808-91062159 [Contig_View]  LINC00502 [Vega]
TCGA cBioPortalLINC00502
AceView (NCBI)LINC00502
Genatlas (Paris)LINC00502
SOURCE (Princeton)LINC00502
Genetics Home Reference (NIH)LINC00502
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00502  -     chr10:91045808-91062159 +  10q23.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00502  -     10q23.31   [Description]    (hg19-Feb_2009)
GoldenPathLINC00502 - 10q23.31 [CytoView hg19]  LINC00502 - 10q23.31 [CytoView hg38]
Genome Data Viewer NCBILINC00502 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AW169934 DB339345
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00502
Gene ExpressionLINC00502 [ NCBI-GEO ]   LINC00502 [ EBI - ARRAY_EXPRESS ]   LINC00502 [ SEEK ]   LINC00502 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00502 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00502 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100874184
GTEX Portal (Tissue expression)LINC00502
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00502
Protein Interaction databases
Ontologies - Pathways
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:56:13 CEST 2021

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