Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC00506 (long intergenic non-protein coding RNA 506)

Identity

Other alias-
HGNC (Hugo) LINC00506
LocusID (NCBI) 100846978
Atlas_Id 65462
Location 3p12.1  [Link to chromosome band 3p12]
Location_base_pair Starts at 87089280 and ends at 87098702 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00506   43557
Cards
Entrez_Gene (NCBI)LINC00506  100846978  long intergenic non-protein coding RNA 506
Aliases
GeneCards (Weizmann)LINC00506
Ensembl hg19 (Hinxton)ENSG00000281392 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000281392 [Gene_View]  chr3:87089280-87098702 [Contig_View]  LINC00506 [Vega]
ICGC DataPortalENSG00000281392
TCGA cBioPortalLINC00506
AceView (NCBI)LINC00506
Genatlas (Paris)LINC00506
WikiGenes100846978
SOURCE (Princeton)LINC00506
Genetics Home Reference (NIH)LINC00506
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00506  -     chr3:87089280-87098702 +  3p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00506  -     3p12.1   [Description]    (hg19-Feb_2009)
EnsemblLINC00506 - 3p12.1 [CytoView hg19]  LINC00506 - 3p12.1 [CytoView hg38]
Mapping of homologs : NCBILINC00506 [Mapview hg19]  LINC00506 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC030609 BC050344 DA227977 DA542035 DB139871
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00506
Cluster EST : UnigeneHs.570649 [ NCBI ]
CGAP (NCI)Hs.570649
Alternative Splicing GalleryENSG00000281392
Gene ExpressionLINC00506 [ NCBI-GEO ]   LINC00506 [ EBI - ARRAY_EXPRESS ]   LINC00506 [ SEEK ]   LINC00506 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00506 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100846978
GTEX Portal (Tissue expression)LINC00506
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00506
DMDM Disease mutations100846978
Blocks (Seattle)LINC00506
Human Protein AtlasENSG00000281392
Protein Interaction databases
FunCoupENSG00000281392
BioGRIDLINC00506
STRING (EMBL)LINC00506
ZODIACLINC00506
Ontologies - Pathways
Huge Navigator LINC00506 [HugePedia]
snp3D : Map Gene to Disease100846978
BioCentury BCIQLINC00506
ClinGenLINC00506
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100846978
Clinical trialLINC00506
Miscellaneous
canSAR (ICR)LINC00506 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00506
EVEXLINC00506
GoPubMedLINC00506
iHOPLINC00506
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:56:43 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.