Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00511 (long intergenic non-protein coding RNA 511)

Identity

Alias (NCBI)LCAL5
onco-lncRNA-12
HGNC (Hugo) LINC00511
HGNC Alias symbonco-lncRNA-12
LocusID (NCBI) 400619
Atlas_Id 55484
Location 17q24.3  [Link to chromosome band 17q24]
Location_base_pair Starts at 72598041 and ends at 72640472 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LINC00511   43564
Cards
Entrez_Gene (NCBI)LINC00511  400619  long intergenic non-protein coding RNA 511
AliasesLCAL5; onco-lncRNA-12
GeneCards (Weizmann)LINC00511
Ensembl hg19 (Hinxton)ENSG00000227036 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000227036 [Gene_View]  ENSG00000227036 [Sequence]  chr17:72598041-72640472 [Contig_View]  LINC00511 [Vega]
ICGC DataPortalENSG00000227036
TCGA cBioPortalLINC00511
AceView (NCBI)LINC00511
Genatlas (Paris)LINC00511
WikiGenes400619
SOURCE (Princeton)LINC00511
Genetics Home Reference (NIH)LINC00511
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00511  -     chr17:72598041-72640472 -  17q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00511  -     17q24.3   [Description]    (hg19-Feb_2009)
GoldenPathLINC00511 - 17q24.3 [CytoView hg19]  LINC00511 - 17q24.3 [CytoView hg38]
ImmunoBaseENSG00000227036
genome Data Viewer NCBILINC00511 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK129994
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00511
Alternative Splicing GalleryENSG00000227036
Gene ExpressionLINC00511 [ NCBI-GEO ]   LINC00511 [ EBI - ARRAY_EXPRESS ]   LINC00511 [ SEEK ]   LINC00511 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00511 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00511 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400619
GTEX Portal (Tissue expression)LINC00511
Human Protein AtlasENSG00000227036-LINC00511 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00511
DMDM Disease mutations400619
Blocks (Seattle)LINC00511
Human Protein Atlas [tissue]ENSG00000227036-LINC00511 [tissue]
Protein Interaction databases
FunCoupENSG00000227036
BioGRIDLINC00511
STRING (EMBL)LINC00511
ZODIACLINC00511
Ontologies - Pathways
Huge Navigator LINC00511 [HugePedia]
snp3D : Map Gene to Disease400619
BioCentury BCIQLINC00511
ClinGenLINC00511
Clinical trials, drugs, therapy
Protein Interactions : CTD400619
Clinical trialLINC00511
Miscellaneous
canSAR (ICR)LINC00511 (select the gene name)
HarmonizomeLINC00511
DataMed IndexLINC00511
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00511
EVEXLINC00511
GoPubMedLINC00511
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 14 14:17:55 CEST 2020

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