Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00515 (long intergenic non-protein coding RNA 515)

Identity

Alias_namesC21orf71
chromosome 21 open reading frame 71
Alias_symbol (synonym)PRED21
Other alias
HGNC (Hugo) LINC00515
LocusID (NCBI) 282566
Atlas_Id 65467
Location 21q21.3  [Link to chromosome band 21q21]
Location_base_pair Starts at 26955087 and ends at 26955536 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00515   16019
Cards
Entrez_Gene (NCBI)LINC00515  282566  long intergenic non-protein coding RNA 515
AliasesC21orf71; PRED21
GeneCards (Weizmann)LINC00515
Ensembl hg19 (Hinxton)ENSG00000260583 [Gene_View]  chr21:26955087-26955536 [Contig_View]  LINC00515 [Vega]
Ensembl hg38 (Hinxton)ENSG00000260583 [Gene_View]  chr21:26955087-26955536 [Contig_View]  LINC00515 [Vega]
ICGC DataPortalENSG00000260583
TCGA cBioPortalLINC00515
AceView (NCBI)LINC00515
Genatlas (Paris)LINC00515
WikiGenes282566
SOURCE (Princeton)LINC00515
Genetics Home Reference (NIH)LINC00515
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00515  -     chr21:26955087-26955536 -  21q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00515  -     21q21.3   [Description]    (hg38-Dec_2013)
EnsemblLINC00515 - 21q21.3 [CytoView hg19]  LINC00515 - 21q21.3 [CytoView hg38]
Mapping of homologs : NCBILINC00515 [Mapview hg19]  LINC00515 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086441 HG511671
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929426
Consensus coding sequences : CCDS (NCBI)LINC00515
Cluster EST : UnigeneHs.384586 [ NCBI ]
CGAP (NCI)Hs.384586
Alternative Splicing GalleryENSG00000260583
Gene ExpressionLINC00515 [ NCBI-GEO ]   LINC00515 [ EBI - ARRAY_EXPRESS ]   LINC00515 [ SEEK ]   LINC00515 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00515 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)282566
GTEX Portal (Tissue expression)LINC00515
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00515
DMDM Disease mutations282566
Blocks (Seattle)LINC00515
Human Protein AtlasENSG00000260583
Protein Interaction databases
FunCoupENSG00000260583
BioGRIDLINC00515
STRING (EMBL)LINC00515
ZODIACLINC00515
Ontologies - Pathways
Huge Navigator LINC00515 [HugePedia]
snp3D : Map Gene to Disease282566
BioCentury BCIQLINC00515
ClinGenLINC00515
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD282566
Chemical/Pharm GKB GenePA134953228
Clinical trialLINC00515
Miscellaneous
canSAR (ICR)LINC00515 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00515
EVEXLINC00515
GoPubMedLINC00515
iHOPLINC00515
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:11:51 CET 2017

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