Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00515 (long intergenic non-protein coding RNA 515)

Identity

Alias (NCBI)C21orf71
PRED21
HGNC (Hugo) LINC00515
HGNC Alias symbPRED21
HGNC Previous nameC21orf71
HGNC Previous namechromosome 21 open reading frame 71
LocusID (NCBI) 282566
Atlas_Id 65467
Location 21q21.3  [Link to chromosome band 21q21]
Location_base_pair Starts at 25582775 and ends at 25583224 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00515   16019
Cards
Entrez_Gene (NCBI)LINC00515  282566  long intergenic non-protein coding RNA 515
AliasesC21orf71; PRED21
GeneCards (Weizmann)LINC00515
Ensembl hg19 (Hinxton)ENSG00000260583 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260583 [Gene_View]  ENSG00000260583 [Sequence]  chr21:25582775-25583224 [Contig_View]  LINC00515 [Vega]
ICGC DataPortalENSG00000260583
TCGA cBioPortalLINC00515
AceView (NCBI)LINC00515
Genatlas (Paris)LINC00515
WikiGenes282566
SOURCE (Princeton)LINC00515
Genetics Home Reference (NIH)LINC00515
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00515  -     chr21:25582775-25583224 -  21q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00515  -     21q21.3   [Description]    (hg19-Feb_2009)
GoldenPathLINC00515 - 21q21.3 [CytoView hg19]  LINC00515 - 21q21.3 [CytoView hg38]
ImmunoBaseENSG00000260583
genome Data Viewer NCBILINC00515 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF086441
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00515
Alternative Splicing GalleryENSG00000260583
Gene ExpressionLINC00515 [ NCBI-GEO ]   LINC00515 [ EBI - ARRAY_EXPRESS ]   LINC00515 [ SEEK ]   LINC00515 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00515 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00515 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)282566
GTEX Portal (Tissue expression)LINC00515
Human Protein AtlasENSG00000260583-LINC00515 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00515
DMDM Disease mutations282566
Blocks (Seattle)LINC00515
Human Protein Atlas [tissue]ENSG00000260583-LINC00515 [tissue]
Protein Interaction databases
FunCoupENSG00000260583
BioGRIDLINC00515
STRING (EMBL)LINC00515
ZODIACLINC00515
Ontologies - Pathways
Huge Navigator LINC00515 [HugePedia]
snp3D : Map Gene to Disease282566
BioCentury BCIQLINC00515
ClinGenLINC00515
Clinical trials, drugs, therapy
Protein Interactions : CTD282566
Pharm GKB GenePA134953228
Clinical trialLINC00515
Miscellaneous
canSAR (ICR)LINC00515 (select the gene name)
HarmonizomeLINC00515
DataMed IndexLINC00515
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00515
EVEXLINC00515
GoPubMedLINC00515
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:16:03 CEST 2020

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