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LINC00517 (long intergenic non-protein coding RNA 517)

Identity

Alias_namesC14orf26
chromosome 14 open reading frame 26
Other alias
HGNC (Hugo) LINC00517
LocusID (NCBI) 400208
Atlas_Id 78209
Location 14q21.1  [Link to chromosome band 14q21]
Location_base_pair Starts at 37896060 and ends at 37902124 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00517   19831
Cards
Entrez_Gene (NCBI)LINC00517  400208  long intergenic non-protein coding RNA 517
AliasesC14orf26
GeneCards (Weizmann)LINC00517
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:37896060-37902124 [Contig_View]  LINC00517 [Vega]
TCGA cBioPortalLILC005074/a>
AceView (NCBI)LINC00517
Genatlas (Paris)LINC00517
WikiGenes400208
SOURCE (Princeton)LINC00517
Genetics Home Reference (NIH)LINC00517
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00517  -     chr14:37896060-37902124 -  14q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00517  -     14q21.1   [Description]    (hg19-Feb_2009)
EnsemblLINC00517 - 14q21.1 [CytoView hg19]  LINC00517 - 14q21.1 [CytoView hg38]
Mapping of homologs : NCBILINC00517 [Mapview hg19]  LINC00517 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA029430 AK125955 BG206779
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00517
Cluster EST : UnigeneHs.660501 [ NCBI ]
CGAP (NCI)Hs.660501
Gene ExpressionLINC00517 [ NCBI-GEO ]   LINC00517 [ EBI - ARRAY_EXPRESS ]   LINC00517 [ SEEK ]   LINC00517 [ MEM ]
Gene Expressin Vimw%r (FireBrowse)LINC00517 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)400208
GTEX Portal (Tissue expression)LINC00517
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00517
DMDM Disease mutations400208
Blocks (Seattle)LINC00517
Protein Interaction databases
BioGRIDLINC00517
STRING (EMBL)LINC00517
ZODIACLINC00517
Ontologies - Pathways
Huge Navigator LINC00517 [HugePedia]
snp3D : Map Gene to Disease400208
BioCentury BCIQLINC00517
ClinGenLINC00517
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400208
Chemical/Pharm GKB GenePA134932418
Clinical trialLINC00517
Miscellaneous
canSAR (ICR)LINC00517 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00517
EVEXLINC00517
GoPubMedLINC00517
iHOPLINC00517
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:54:23 CET 2017

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