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LINC00518 (long intergenic non-protein coding RNA 518)

Identity

Alias_namesC6orf218
chromosome 6 open reading frame 218
Alias_symbol (synonym)MGC40222
Other alias
HGNC (Hugo) LINC00518
LocusID (NCBI) 221718
Atlas_Id 65468
Location 6p24.3  [Link to chromosome band 6p24]
Location_base_pair Starts at 10429362 and ends at 10434822 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00518   28626
Cards
Entrez_Gene (NCBI)LINC00518  221718  long intergenic non-protein coding RNA 518
AliasesC6orf218
GeneCards (Weizmann)LINC00518
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:10429362-10434822 [Contig_View]  LINC00518 [Vega]
TCGA cBioPortalLINC00518
AceView (NCBI)LINC00518
Genatlas (Paris)LINC00518
WikiGenes221718
SOURCE (Princeton)LINC00518
Genetics Home Reference (NIH)LINC00518
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00518  -     chr6:10429362-10434822 -  6p24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00518  -     6p24.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00518 - 6p24.3 [CytoView hg19]  LINC00518 - 6p24.3 [CytoView hg38]
Mapping of homologs : NCBILINC00518 [Mapview hg19]  LINC00518 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC016666 BC017496 BC028118
RefSeq transcript (Entrez)NM_152738
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00518
Cluster EST : UnigeneHs.44714 [ NCBI ]
CGAP (NCI)Hs.44714
Gene ExpressionLINC00518 [ NCBI-GEO ]   LINC00518 [ EBI - ARRAY_EXPRESS ]   LINC00518 [ SEEK ]   LINC00518 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00518 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221718
GTEX Portal (Tissue expression)LINC00518
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0U6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N0U6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N0U6
Splice isoforms : SwissVarQ8N0U6
PhosPhoSitePlusQ8N0U6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00518
DMDM Disease mutations221718
Blocks (Seattle)LINC00518
SuperfamilyQ8N0U6
Peptide AtlasQ8N0U6
HPRD17554
IPIIPI00166076   
Protein Interaction databases
DIP (DOE-UCLA)Q8N0U6
IntAct (EBI)Q8N0U6
BioGRIDLINC00518
STRING (EMBL)LINC00518
ZODIACLINC00518
Ontologies - Pathways
QuickGOQ8N0U6
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkLINC00518
Atlas of Cancer Signalling NetworkLINC00518
Wikipedia pathwaysLINC00518
Orthology - Evolution
OrthoDB221718
Phylogenetic Trees/Animal Genes : TreeFamLINC00518
HOVERGENQ8N0U6
HOGENOMQ8N0U6
Homologs : HomoloGeneLINC00518
Homology/Alignments : Family Browser (UCSC)LINC00518
Gene fusions - Rearrangements
Fusion : QuiverLINC00518
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00518 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00518
dbVarLINC00518
ClinVarLINC00518
1000_GenomesLINC00518 
Exome Variant ServerLINC00518
Varsome BrowserLINC00518
Genetic variants : HAPMAP221718
Genomic Variants (DGV)LINC00518 [DGVbeta]
DECIPHERLINC00518 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00518 
Mutations
ICGC Data PortalLINC00518 
TCGA Data PortalLINC00518 
Broad Tumor PortalLINC00518
OASIS PortalLINC00518 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00518
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00518
DgiDB (Drug Gene Interaction Database)LINC00518
DoCM (Curated mutations)LINC00518 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00518 (select a term)
intoGenLINC00518
Cancer3DLINC00518(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC00518
MedgenLINC00518
Genetic Testing Registry LINC00518
NextProtQ8N0U6 [Medical]
TSGene221718
GENETestsLINC00518
Target ValidationLINC00518
Huge Navigator LINC00518 [HugePedia]
snp3D : Map Gene to Disease221718
BioCentury BCIQLINC00518
ClinGenLINC00518
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221718
Chemical/Pharm GKB GenePA144596499
Clinical trialLINC00518
Miscellaneous
canSAR (ICR)LINC00518 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00518
EVEXLINC00518
GoPubMedLINC00518
iHOPLINC00518
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:52:58 CEST 2018

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