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LINC00521 (long intergenic non-protein coding RNA 521)

Identity

Alias_namesC14orf48
chromosome 14 open reading frame 48
Other aliasc14_5713
HGNC (Hugo) LINC00521
LocusID (NCBI) 256369
Atlas_Id 78149
Location 14q32.12  [Link to chromosome band 14q32]

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00521   19860
Cards
Entrez_Gene (NCBI)LINC00521  256369  long intergenic non-protein coding RNA 521
AliasesC14orf48; c14_5713
GeneCards (Weizmann)LINC00521
Ensembl hg19 (Hinxton)ENSG00000175699 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175699 [Gene_View]  - [Contig_View]  LINC00521 [Vega]
ICGC DataPortalENSG00000175699
TCGA cBioPortalLINC00521
AceView (NCBI)LINC00521
Genatlas (Paris)LINC00521
WikiGenes256369
SOURCE (Princeton)LINC00521
Genetics Home Reference (NIH)LINC00521
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00521  -  
GoldenPath hg19 (UCSC)LINC00521  -  
EnsemblLINC00521 - [CytoView hg19]  LINC00521 - [CytoView hg38]
Mapping of homologs : NCBILINC00521 [Mapview hg19]  LINC00521 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA412651 AK097741 AL157489 BC021728 BC031252
RefSeq transcript (Entrez)NM_152777
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_187601
Consensus coding sequences : CCDS (NCBI)LINC00521
Cluster EST : UnigeneHs.143845 [ NCBI ]
CGAP (NCI)Hs.143845
Alternative Splicing GalleryENSG00000175699
Gene ExpressionLINC00521 [ NCBI-GEO ]   LINC00521 [ EBI - ARRAY_EXPRESS ]   LINC00521 [ SEEK ]   LINC00521 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00521 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256369
GTEX Portal (Tissue expression)LINC00521
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCU1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCU1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCU1
Splice isoforms : SwissVarQ8NCU1
PhosPhoSitePlusQ8NCU1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00521
DMDM Disease mutations256369
Blocks (Seattle)LINC00521
SuperfamilyQ8NCU1
Human Protein AtlasENSG00000175699
Peptide AtlasQ8NCU1
HPRD12651
IPIIPI00168455   IPI00242370   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCU1
IntAct (EBI)Q8NCU1
FunCoupENSG00000175699
BioGRIDLINC00521
STRING (EMBL)LINC00521
ZODIACLINC00521
Ontologies - Pathways
QuickGOQ8NCU1
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkLINC00521
Atlas of Cancer Signalling NetworkLINC00521
Wikipedia pathwaysLINC00521
Orthology - Evolution
OrthoDB256369
GeneTree (enSembl)ENSG00000175699
Phylogenetic Trees/Animal Genes : TreeFamLINC00521
HOVERGENQ8NCU1
HOGENOMQ8NCU1
Homologs : HomoloGeneLINC00521
Homology/Alignments : Family Browser (UCSC)LINC00521
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00521 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00521
dbVarLINC00521
ClinVarLINC00521
1000_GenomesLINC00521 
Exome Variant ServerLINC00521
ExAC (Exome Aggregation Consortium)LINC00521 (select the gene name)
Genetic variants : HAPMAP256369
Genomic Variants (DGV)LINC00521 [DGVbeta]
DECIPHERLINC00521 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00521 
Mutations
ICGC Data PortalLINC00521 
TCGA Data PortalLINC00521 
Broad Tumor PortalLINC00521
OASIS PortalLINC00521 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00521
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00521
DgiDB (Drug Gene Interaction Database)LINC00521
DoCM (Curated mutations)LINC00521 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00521 (select a term)
intoGenLINC00521
Cancer3DLINC00521(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00521
Genetic Testing Registry LINC00521
NextProtQ8NCU1 [Medical]
TSGene256369
GENETestsLINC00521
Target ValidationLINC00521
Huge Navigator LINC00521 [HugePedia]
snp3D : Map Gene to Disease256369
BioCentury BCIQLINC00521
ClinGenLINC00521
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256369
Chemical/Pharm GKB GenePA134880534
Clinical trialLINC00521
Miscellaneous
canSAR (ICR)LINC00521 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00521
EVEXLINC00521
GoPubMedLINC00521
iHOPLINC00521
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:13:15 CEST 2017

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