Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC00523 (long intergenic non-protein coding RNA 523)

Identity

Alias_namesC14orf70
chromosome 14 open reading frame 70
Other alias
HGNC (Hugo) LINC00523
LocusID (NCBI) 283601
Atlas_Id 65470
Location 14q32.2  [Link to chromosome band 14q32]
Location_base_pair Starts at 100657250 and ends at 100672775 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00523   20117
Cards
Entrez_Gene (NCBI)LINC00523  283601  long intergenic non-protein coding RNA 523
AliasesC14orf70
GeneCards (Weizmann)LINC00523
Ensembl hg19 (Hinxton)ENSG00000196273 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196273 [Gene_View]  chr14:100657250-100672775 [Contig_View]  LINC00523 [Vega]
ICGC DataPortalENSG00000196273
TCGA cBioPortalLINC00523
AceView (NCBI)LINC00523
Genatlas (Paris)LINC00523
WikiGenes283601
SOURCE (Princeton)LINC00523
Genetics Home Reference (NIH)LINC00523
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00523  -     chr14:100657250-100672775 +  14q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00523  -     14q32.2   [Description]    (hg19-Feb_2009)
EnsemblLINC00523 - 14q32.2 [CytoView hg19]  LINC00523 - 14q32.2 [CytoView hg38]
Mapping of homologs : NCBILINC00523 [Mapview hg19]  LINC00523 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094097 BC132989 BC132991 BX161445
RefSeq transcript (Entrez)NM_001007560
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00523
Cluster EST : UnigeneHs.379802 [ NCBI ]
CGAP (NCI)Hs.379802
Alternative Splicing GalleryENSG00000196273
Gene ExpressionLINC00523 [ NCBI-GEO ]   LINC00523 [ EBI - ARRAY_EXPRESS ]   LINC00523 [ SEEK ]   LINC00523 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00523 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283601
GTEX Portal (Tissue expression)LINC00523
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86TU6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86TU6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86TU6
Splice isoforms : SwissVarQ86TU6
PhosPhoSitePlusQ86TU6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00523
DMDM Disease mutations283601
Blocks (Seattle)LINC00523
SuperfamilyQ86TU6
Human Protein AtlasENSG00000196273
Peptide AtlasQ86TU6
HPRD16621
IPIIPI00384149   
Protein Interaction databases
DIP (DOE-UCLA)Q86TU6
IntAct (EBI)Q86TU6
FunCoupENSG00000196273
BioGRIDLINC00523
STRING (EMBL)LINC00523
ZODIACLINC00523
Ontologies - Pathways
QuickGOQ86TU6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00523
Atlas of Cancer Signalling NetworkLINC00523
Wikipedia pathwaysLINC00523
Orthology - Evolution
OrthoDB283601
GeneTree (enSembl)ENSG00000196273
Phylogenetic Trees/Animal Genes : TreeFamLINC00523
HOVERGENQ86TU6
HOGENOMQ86TU6
Homologs : HomoloGeneLINC00523
Homology/Alignments : Family Browser (UCSC)LINC00523
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00523 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00523
dbVarLINC00523
ClinVarLINC00523
1000_GenomesLINC00523 
Exome Variant ServerLINC00523
ExAC (Exome Aggregation Consortium)LINC00523 (select the gene name)
Genetic variants : HAPMAP283601
Genomic Variants (DGV)LINC00523 [DGVbeta]
DECIPHERLINC00523 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00523 
Mutations
ICGC Data PortalLINC00523 
TCGA Data PortalLINC00523 
Broad Tumor PortalLINC00523
OASIS PortalLINC00523 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00523
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00523
DgiDB (Drug Gene Interaction Database)LINC00523
DoCM (Curated mutations)LINC00523 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00523 (select a term)
intoGenLINC00523
Cancer3DLINC00523(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00523
Genetic Testing Registry LINC00523
NextProtQ86TU6 [Medical]
TSGene283601
GENETestsLINC00523
Huge Navigator LINC00523 [HugePedia]
snp3D : Map Gene to Disease283601
BioCentury BCIQLINC00523
ClinGenLINC00523
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283601
Chemical/Pharm GKB GenePA134917484
Clinical trialLINC00523
Miscellaneous
canSAR (ICR)LINC00523 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00523
EVEXLINC00523
GoPubMedLINC00523
iHOPLINC00523
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:20:23 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.