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LINC00526 (long intergenic non-protein coding RNA 526)

Identity

Alias_namesC18orf18
chromosome 18 open reading frame 18
Alias_symbol (synonym)MGC17515
HsT959
Other alias
HGNC (Hugo) LINC00526
LocusID (NCBI) 147525
Atlas_Id 65473
Location 18p11.31  [Link to chromosome band 18p11]
Location_base_pair Starts at 5237130 and ends at 5238598 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00526   28278
Cards
Entrez_Gene (NCBI)LINC00526  147525  long intergenic non-protein coding RNA 526
AliasesC18orf18; HsT959
GeneCards (Weizmann)LINC00526
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr18:5237130-5238598 [Contig_View]  LINC00526 [Vega]
TCGA cBioPortalLINC00526
AceView (NCBI)LINC00526
Genatlas (Paris)LINC00526
WikiGenes147525
SOURCE (Princeton)LINC00526
Genetics Home Reference (NIH)LINC00526
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00526  -     chr18:5237130-5238598 -  18p11.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00526  -     18p11.31   [Description]    (hg19-Feb_2009)
EnsemblLINC00526 - 18p11.31 [CytoView hg19]  LINC00526 - 18p11.31 [CytoView hg38]
Mapping of homologs : NCBILINC00526 [Mapview hg19]  LINC00526 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK292743 BC010538
RefSeq transcript (Entrez)NM_152471
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00526
Cluster EST : UnigeneHs.657197 [ NCBI ]
CGAP (NCI)Hs.657197
Gene ExpressionLINC00526 [ NCBI-GEO ]   LINC00526 [ EBI - ARRAY_EXPRESS ]   LINC00526 [ SEEK ]   LINC00526 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00526 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147525
GTEX Portal (Tissue expression)LINC00526
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FQ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FQ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FQ7
Splice isoforms : SwissVarQ96FQ7
PhosPhoSitePlusQ96FQ7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00526
DMDM Disease mutations147525
Blocks (Seattle)LINC00526
SuperfamilyQ96FQ7
Peptide AtlasQ96FQ7
IPIIPI00062121   
Protein Interaction databases
DIP (DOE-UCLA)Q96FQ7
IntAct (EBI)Q96FQ7
BioGRIDLINC00526
STRING (EMBL)LINC00526
ZODIACLINC00526
Ontologies - Pathways
QuickGOQ96FQ7
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkLINC00526
Atlas of Cancer Signalling NetworkLINC00526
Wikipedia pathwaysLINC00526
Orthology - Evolution
OrthoDB147525
Phylogenetic Trees/Animal Genes : TreeFamLINC00526
HOVERGENQ96FQ7
HOGENOMQ96FQ7
Homologs : HomoloGeneLINC00526
Homology/Alignments : Family Browser (UCSC)LINC00526
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00526 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00526
dbVarLINC00526
ClinVarLINC00526
1000_GenomesLINC00526 
Exome Variant ServerLINC00526
ExAC (Exome Aggregation Consortium)LINC00526 (select the gene name)
Genetic variants : HAPMAP147525
Genomic Variants (DGV)LINC00526 [DGVbeta]
DECIPHERLINC00526 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00526 
Mutations
ICGC Data PortalLINC00526 
TCGA Data PortalLINC00526 
Broad Tumor PortalLINC00526
OASIS PortalLINC00526 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00526
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00526
DgiDB (Drug Gene Interaction Database)LINC00526
DoCM (Curated mutations)LINC00526 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00526 (select a term)
intoGenLINC00526
Cancer3DLINC00526(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00526
Genetic Testing Registry LINC00526
NextProtQ96FQ7 [Medical]
TSGene147525
GENETestsLINC00526
Target ValidationLINC00526
Huge Navigator LINC00526 [HugePedia]
snp3D : Map Gene to Disease147525
BioCentury BCIQLINC00526
ClinGenLINC00526
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147525
Chemical/Pharm GKB GenePA134992212
Clinical trialLINC00526
Miscellaneous
canSAR (ICR)LINC00526 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00526
EVEXLINC00526
GoPubMedLINC00526
iHOPLINC00526
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:56:45 CEST 2017

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