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LINC00527 (long intergenic non-protein coding RNA 527)

Identity

Alias_namesC21orf104
chromosome 21 open reading frame 104
Other alias
HGNC (Hugo) LINC00527
LocusID (NCBI) 54748
Atlas_Id 65474
Location 21q22.2  [Link to chromosome band 21q22]
Location_base_pair Starts at 39023000 and ends at 39023835 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC00527   17215
Cards
Entrez_Gene (NCBI)LINC00527  54748  long intergenic non-protein coding RNA 527
AliasesC21orf104
GeneCards (Weizmann)LINC00527
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:39023000-39023835 [Contig_View]  LINC00527 [Vega]
TCGA cBioPortalLINC00527
AceView (NCBI)LINC00527
Genatlas (Paris)LINC00527
WikiGenes54748
SOURCE (Princeton)LINC00527
Genetics Home Reference (NIH)LINC00527
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00527  -     chr21:39023000-39023835 -  21q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00527  -     21q22.2   [Description]    (hg19-Feb_2009)
EnsemblLINC00527 - 21q22.2 [CytoView hg19]  LINC00527 - 21q22.2 [CytoView hg38]
Mapping of homologs : NCBILINC00527 [Mapview hg19]  LINC00527 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ011409
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00527
Cluster EST : UnigeneHs.548784 [ NCBI ]
CGAP (NCI)Hs.548784
Gene ExpressionLINC00527 [ NCBI-GEO ]   LINC00527 [ EBI - ARRAY_EXPRESS ]   LINC00527 [ SEEK ]   LINC00527 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00527 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54748
GTEX Portal (Tissue expression)LINC00527
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJ94   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJ94  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJ94
Splice isoforms : SwissVarQ9UJ94
PhosPhoSitePlusQ9UJ94
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00527
DMDM Disease mutations54748
Blocks (Seattle)LINC00527
SuperfamilyQ9UJ94
Peptide AtlasQ9UJ94
IPIIPI00022668   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJ94
IntAct (EBI)Q9UJ94
BioGRIDLINC00527
STRING (EMBL)LINC00527
ZODIACLINC00527
Ontologies - Pathways
QuickGOQ9UJ94
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00527
Atlas of Cancer Signalling NetworkLINC00527
Wikipedia pathwaysLINC00527
Orthology - Evolution
OrthoDB54748
Phylogenetic Trees/Animal Genes : TreeFamLINC00527
HOVERGENQ9UJ94
HOGENOMQ9UJ94
Homologs : HomoloGeneLINC00527
Homology/Alignments : Family Browser (UCSC)LINC00527
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00527 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00527
dbVarLINC00527
ClinVarLINC00527
1000_GenomesLINC00527 
Exome Variant ServerLINC00527
ExAC (Exome Aggregation Consortium)LINC00527 (select the gene name)
Genetic variants : HAPMAP54748
Genomic Variants (DGV)LINC00527 [DGVbeta]
DECIPHERLINC00527 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00527 
Mutations
ICGC Data PortalLINC00527 
TCGA Data PortalLINC00527 
Broad Tumor PortalLINC00527
OASIS PortalLINC00527 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00527
BioMutasearch LINC00527
DgiDB (Drug Gene Interaction Database)LINC00527
DoCM (Curated mutations)LINC00527 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00527 (select a term)
intoGenLINC00527
Cancer3DLINC00527(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00527
Genetic Testing Registry LINC00527
NextProtQ9UJ94 [Medical]
TSGene54748
GENETestsLINC00527
Target ValidationLINC00527
Huge Navigator LINC00527 [HugePedia]
snp3D : Map Gene to Disease54748
BioCentury BCIQLINC00527
ClinGenLINC00527
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54748
Chemical/Pharm GKB GenePA134912119
Clinical trialLINC00527
Miscellaneous
canSAR (ICR)LINC00527 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00527
EVEXLINC00527
GoPubMedLINC00527
iHOPLINC00527
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:56:46 CEST 2017

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