Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00528 (long intergenic non-protein coding RNA 528)

Identity

Alias_namesC22orf37
chromosome 22 open reading frame 37
Alias_symbol (synonym)FLJ40542
Other alias
HGNC (Hugo) LINC00528
LocusID (NCBI) 200298
Atlas_Id 65475
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 17777290 and ends at 17779481 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00528   26875
Cards
Entrez_Gene (NCBI)LINC00528  200298  long intergenic non-protein coding RNA 528
AliasesC22orf37
GeneCards (Weizmann)LINC00528
Ensembl hg19 (Hinxton)ENSG00000269220 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000269220 [Gene_View]  chr22:17777290-17779481 [Contig_View]  LINC00528 [Vega]
ICGC DataPortalENSG00000269220
TCGA cBioPortalLINC00528
AceView (NCBI)LINC00528
Genatlas (Paris)LINC00528
WikiGenes200298
SOURCE (Princeton)LINC00528
Genetics Home Reference (NIH)LINC00528
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00528  -     chr22:17777290-17779481 +  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00528  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblLINC00528 - 22q11.21 [CytoView hg19]  LINC00528 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBILINC00528 [Mapview hg19]  LINC00528 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097861 AW406974 DB114556
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00528
Cluster EST : UnigeneHs.517397 [ NCBI ]
CGAP (NCI)Hs.517397
Alternative Splicing GalleryENSG00000269220
Gene ExpressionLINC00528 [ NCBI-GEO ]   LINC00528 [ EBI - ARRAY_EXPRESS ]   LINC00528 [ SEEK ]   LINC00528 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00528 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200298
GTEX Portal (Tissue expression)LINC00528
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N1L1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N1L1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N1L1
Splice isoforms : SwissVarQ8N1L1
PhosPhoSitePlusQ8N1L1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00528
DMDM Disease mutations200298
Blocks (Seattle)LINC00528
SuperfamilyQ8N1L1
Human Protein AtlasENSG00000269220
Peptide AtlasQ8N1L1
IPIIPI00166189   
Protein Interaction databases
DIP (DOE-UCLA)Q8N1L1
IntAct (EBI)Q8N1L1
FunCoupENSG00000269220
BioGRIDLINC00528
STRING (EMBL)LINC00528
ZODIACLINC00528
Ontologies - Pathways
QuickGOQ8N1L1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00528
Atlas of Cancer Signalling NetworkLINC00528
Wikipedia pathwaysLINC00528
Orthology - Evolution
OrthoDB200298
GeneTree (enSembl)ENSG00000269220
Phylogenetic Trees/Animal Genes : TreeFamLINC00528
HOVERGENQ8N1L1
HOGENOMQ8N1L1
Homologs : HomoloGeneLINC00528
Homology/Alignments : Family Browser (UCSC)LINC00528
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00528 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00528
dbVarLINC00528
ClinVarLINC00528
1000_GenomesLINC00528 
Exome Variant ServerLINC00528
ExAC (Exome Aggregation Consortium)LINC00528 (select the gene name)
Genetic variants : HAPMAP200298
Genomic Variants (DGV)LINC00528 [DGVbeta]
DECIPHERLINC00528 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00528 
Mutations
ICGC Data PortalLINC00528 
TCGA Data PortalLINC00528 
Broad Tumor PortalLINC00528
OASIS PortalLINC00528 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLINC00528  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLINC00528
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00528
DgiDB (Drug Gene Interaction Database)LINC00528
DoCM (Curated mutations)LINC00528 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00528 (select a term)
intoGenLINC00528
Cancer3DLINC00528(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00528
Genetic Testing Registry LINC00528
NextProtQ8N1L1 [Medical]
TSGene200298
GENETestsLINC00528
Target ValidationLINC00528
Huge Navigator LINC00528 [HugePedia]
snp3D : Map Gene to Disease200298
BioCentury BCIQLINC00528
ClinGenLINC00528
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200298
Clinical trialLINC00528
Miscellaneous
canSAR (ICR)LINC00528 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00528
EVEXLINC00528
GoPubMedLINC00528
iHOPLINC00528
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:13:16 CEST 2017

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