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LINC00533 (long intergenic non-protein coding RNA 533)

Identity

Alias_namesC6orf38
chromosome 6 open reading frame 38
Alias_symbol (synonym)bA373N24.1
C6orf39
Other alias
HGNC (Hugo) LINC00533
LocusID (NCBI) 387055
Atlas_Id 78229
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 28648286 and ends at 28654475 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00533   18690
Cards
Entrez_Gene (NCBI)LINC00533  387055  long intergenic non-protein coding RNA 533
AliasesC6orf38; C6orf39
GeneCards (Weizmann)LINC00533
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:28648286-28654475 [Contig_View]  LINC00533 [Vega]
TCGA cBioPortalLINC00533
AceView (NCBI)LINC00533
Genatlas (Paris)LINC00533
WikiGenes387055
SOURCE (Princeton)LINC00533
Genetics Home Reference (NIH)LINC00533
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00533  -     chr6:28648286-28654475 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00533  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblLINC00533 - 6p22.1 [CytoView hg19]  LINC00533 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBILINC00533 [Mapview hg19]  LINC00533 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891
Consensus coding sequences : CCDS (NCBI)LINC00533
Cluster EST : UnigeneHs.369401 [ NCBI ]
CGAP (NCI)Hs.369401
Gene ExpressionLINC00533 [ NCBI-GEO ]   LINC00533 [ EBI - ARRAY_EXPRESS ]   LINC00533 [ SEEK ]   LINC00533 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00533 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)387055
GTEX Portal (Tissue expression)LINC00533
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00533
DMDM Disease mutations387055
Blocks (Seattle)LINC00533
Protein Interaction databases
BioGRIDLINC00533
STRING (EMBL)LINC00533
ZODIACLINC00533
Ontologies - Pathways
Huge Navigator LINC00533 [HugePedia]
snp3D : Map Gene to Disease387055
BioCentury BCIQLINC00533
ClinGenLINC00533
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387055
Chemical/Pharm GKB GenePA134878064
Clinical trialLINC00533
Miscellaneous
canSAR (ICR)LINC00533 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00533
EVEXLINC00533
GoPubMedLINC00533
iHOPLINC00533
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:53:00 CEST 2018

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