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LINC00534 (long intergenic non-protein coding RNA 534)

Identity

Other alias-
HGNC (Hugo) LINC00534
LocusID (NCBI) 100874052
Atlas_Id 65477
Location 8q21.3  [Link to chromosome band 8q21]
Location_base_pair Starts at 90221488 and ends at 90387959 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00534   43643
Cards
Entrez_Gene (NCBI)LINC00534  100874052  long intergenic non-protein coding RNA 534
Aliases
GeneCards (Weizmann)LINC00534
Ensembl hg19 (Hinxton)ENSG00000253394 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253394 [Gene_View]  chr8:90221488-90387959 [Contig_View]  LINC00534 [Vega]
ICGC DataPortalENSG00000253394
TCGA cBioPortalLINC00534
AceView (NCBI)LINC00534
Genatlas (Paris)LINC00534
WikiGenes100874052
SOURCE (Princeton)LINC00534
Genetics Home Reference (NIH)LINC00534
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00534  -     chr8:90221488-90387959 +  8q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00534  -     8q21.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00534 - 8q21.3 [CytoView hg19]  LINC00534 - 8q21.3 [CytoView hg38]
Mapping of homologs : NCBILINC00534 [Mapview hg19]  LINC00534 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BF212685 BG492574 BG494657 BG496346
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00534
Cluster EST : UnigeneHs.571514 [ NCBI ]
CGAP (NCI)Hs.571514
Alternative Splicing GalleryENSG00000253394
Gene ExpressionLINC00534 [ NCBI-GEO ]   LINC00534 [ EBI - ARRAY_EXPRESS ]   LINC00534 [ SEEK ]   LINC00534 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00534 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874052
GTEX Portal (Tissue expression)LINC00534
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00534
DMDM Disease mutations100874052
Blocks (Seattle)LINC00534
Human Protein AtlasENSG00000253394
Protein Interaction databases
FunCoupENSG00000253394
BioGRIDLINC00534
STRING (EMBL)LINC00534
ZODIACLINC00534
Ontologies - Pathways
Huge Navigator LINC00534 [HugePedia]
snp3D : Map Gene to Disease100874052
BioCentury BCIQLINC00534
ClinGenLINC00534
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874052
Clinical trialLINC00534
Miscellaneous
canSAR (ICR)LINC00534 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00534
EVEXLINC00534
GoPubMedLINC00534
iHOPLINC00534
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:56:47 CEST 2017

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