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LINC00535 (long intergenic non-protein coding RNA 535)

Identity

Other alias-
HGNC (Hugo) LINC00535
LocusID (NCBI) 642924
Atlas_Id 65478
Location 8q22.1  [Link to chromosome band 8q22]
Location_base_pair Starts at 93346467 and ends at 93700433 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GNG7 (19p13.3) / LINC00535 (8q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00535   43644
Cards
Entrez_Gene (NCBI)LINC00535  642924  long intergenic non-protein coding RNA 535
Aliases
GeneCards (Weizmann)LINC00535
Ensembl hg19 (Hinxton)ENSG00000246662 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000246662 [Gene_View]  chr8:93346467-93700433 [Contig_View]  LINC00535 [Vega]
ICGC DataPortalENSG00000246662
TCGA cBioPortalLINC00535
AceView (NCBI)LINC00535
Genatlas (Paris)LINC00535
WikiGenes642924
SOURCE (Princeton)LINC00535
Genetics Home Reference (NIH)LINC00535
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00535  -     chr8:93346467-93700433 -  8q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00535  -     8q22.1   [Description]    (hg19-Feb_2009)
EnsemblLINC00535 - 8q22.1 [CytoView hg19]  LINC00535 - 8q22.1 [CytoView hg38]
Mapping of homologs : NCBILINC00535 [Mapview hg19]  LINC00535 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC037909
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00535
Cluster EST : UnigeneHs.434882 [ NCBI ]
CGAP (NCI)Hs.434882
Alternative Splicing GalleryENSG00000246662
Gene ExpressionLINC00535 [ NCBI-GEO ]   LINC00535 [ EBI - ARRAY_EXPRESS ]   LINC00535 [ SEEK ]   LINC00535 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00535 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)642924
GTEX Portal (Tissue expression)LINC00535
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00535
DMDM Disease mutations642924
Blocks (Seattle)LINC00535
Human Protein AtlasENSG00000246662
Protein Interaction databases
FunCoupENSG00000246662
BioGRIDLINC00535
STRING (EMBL)LINC00535
ZODIACLINC00535
Ontologies - Pathways
Huge Navigator LINC00535 [HugePedia]
snp3D : Map Gene to Disease642924
BioCentury BCIQLINC00535
ClinGenLINC00535
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD642924
Clinical trialLINC00535
Miscellaneous
canSAR (ICR)LINC00535 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00535
EVEXLINC00535
GoPubMedLINC00535
iHOPLINC00535
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:56:47 CEST 2017

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