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LINC00536 (long intergenic non-protein coding RNA 536)

Identity

Other alias-
HGNC (Hugo) LINC00536
LocusID (NCBI) 100859921
Atlas_Id 65479
Location 8q23.3  [Link to chromosome band 8q23]
Location_base_pair Starts at 115950511 and ends at 116325059 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00536   43645
Cards
Entrez_Gene (NCBI)LINC00536  100859921  long intergenic non-protein coding RNA 536
Aliases
GeneCards (Weizmann)LINC00536
Ensembl hg19 (Hinxton)ENSG00000249917 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249917 [Gene_View]  chr8:115950511-116325059 [Contig_View]  LINC00536 [Vega]
ICGC DataPortalENSG00000249917
TCGA cBioPortalLINC00536
AceView (NCBI)LINC00536
Genatlas (Paris)LINC00536
WikiGenes100859921
SOURCE (Princeton)LINC00536
Genetics Home Reference (NIH)LINC00536
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00536  -     chr8:115950511-116325059 -  8q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00536  -     8q23.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00536 - 8q23.3 [CytoView hg19]  LINC00536 - 8q23.3 [CytoView hg38]
Mapping of homologs : NCBILINC00536 [Mapview hg19]  LINC00536 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC040336
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00536
Cluster EST : UnigeneHs.552281 [ NCBI ]
CGAP (NCI)Hs.552281
Alternative Splicing GalleryENSG00000249917
Gene ExpressionLINC00536 [ NCBI-GEO ]   LINC00536 [ EBI - ARRAY_EXPRESS ]   LINC00536 [ SEEK ]   LINC00536 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00536 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100859921
GTEX Portal (Tissue expression)LINC00536
Human Protein AtlasENSG00000249917-LINC00536 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00536
DMDM Disease mutations100859921
Blocks (Seattle)LINC00536
Human Protein Atlas [tissue]ENSG00000249917-LINC00536 [tissue]
Protein Interaction databases
FunCoupENSG00000249917
BioGRIDLINC00536
STRING (EMBL)LINC00536
ZODIACLINC00536
Ontologies - Pathways
Huge Navigator LINC00536 [HugePedia]
snp3D : Map Gene to Disease100859921
BioCentury BCIQLINC00536
ClinGenLINC00536
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100859921
Clinical trialLINC00536
Miscellaneous
canSAR (ICR)LINC00536 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00536
EVEXLINC00536
GoPubMedLINC00536
iHOPLINC00536
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:18:19 CET 2017

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