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LINC00538 (long intergenic non-protein coding RNA 538)

Identity

Alias_symbol (synonym)Yiya
PROX1UT
Other alias
HGNC (Hugo) LINC00538
LocusID (NCBI) 100861504
Atlas_Id 65481
Location 1q32.3  [Link to chromosome band 1q32]
Location_base_pair Starts at 213924749 and ends at 213926653 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00538   43655
Cards
Entrez_Gene (NCBI)LINC00538  100861504  long intergenic non-protein coding RNA 538
AliasesPROX1UT; Yiya
GeneCards (Weizmann)LINC00538
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:213924749-213926653 [Contig_View]  LINC00538 [Vega]
TCGA cBioPortalLINC00538
AceView (NCBI)LINC00538
Genatlas (Paris)LINC00538
WikiGenes100861504
SOURCE (Princeton)LINC00538
Genetics Home Reference (NIH)LINC00538
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00538  -     chr1:213924749-213926653 +  1q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00538  -     1q32.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00538 - 1q32.3 [CytoView hg19]  LINC00538 - 1q32.3 [CytoView hg38]
Mapping of homologs : NCBILINC00538 [Mapview hg19]  LINC00538 [Mapview hg38]
OMIM614635   
Gene and transcription
Genbank (Entrez)JF495099
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00538
Cluster EST : UnigeneHs.742586 [ NCBI ]
CGAP (NCI)Hs.742586
Gene ExpressionLINC00538 [ NCBI-GEO ]   LINC00538 [ EBI - ARRAY_EXPRESS ]   LINC00538 [ SEEK ]   LINC00538 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00538 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100861504
GTEX Portal (Tissue expression)LINC00538
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00538
DMDM Disease mutations100861504
Blocks (Seattle)LINC00538
Protein Interaction databases
BioGRIDLINC00538
STRING (EMBL)LINC00538
ZODIACLINC00538
Ontologies - Pathways
Huge Navigator LINC00538 [HugePedia]
snp3D : Map Gene to Disease100861504
BioCentury BCIQLINC00538
ClinGenLINC00538
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100861504
Clinical trialLINC00538
Miscellaneous
canSAR (ICR)LINC00538 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00538
EVEXLINC00538
GoPubMedLINC00538
iHOPLINC00538
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:56:47 CEST 2017

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