Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC00539 (long intergenic non-protein coding RNA 539)

Identity

Alias_namesLINC00422
long intergenic non-protein coding RNA 422
Other alias
HGNC (Hugo) LINC00539
LocusID (NCBI) 100652865
Atlas_Id 65482
Location 13q12.11  [Link to chromosome band 13q12]
Location_base_pair Starts at 21303512 and ends at 21344786 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00539   43672
Cards
Entrez_Gene (NCBI)LINC00539  100652865  long intergenic non-protein coding RNA 539
AliasesLINC00422
GeneCards (Weizmann)LINC00539
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:21303512-21344786 [Contig_View]  LINC00539 [Vega]
TCGA cBioPortalLINC00539
AceView (NCBI)LINC00539
Genatlas (Paris)LINC00539
WikiGenes100652865
SOURCE (Princeton)LINC00539
Genetics Home Reference (NIH)LINC00539
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00539  -     chr13:21303512-21344786 -  13q12.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00539  -     13q12.11   [Description]    (hg19-Feb_2009)
EnsemblLINC00539 - 13q12.11 [CytoView hg19]  LINC00539 - 13q12.11 [CytoView hg38]
Mapping of homologs : NCBILINC00539 [Mapview hg19]  LINC00539 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA446493 AI206458 BF185586 BQ007438 CD684045
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00539
Cluster EST : UnigeneHs.659198 [ NCBI ]
CGAP (NCI)Hs.659198
Gene ExpressionLINC00539 [ NCBI-GEO ]   LINC00539 [ EBI - ARRAY_EXPRESS ]   LINC00539 [ SEEK ]   LINC00539 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00539 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100652865
GTEX Portal (Tissue expression)LINC00539
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00539
DMDM Disease mutations100652865
Blocks (Seattle)LINC00539
Protein Interaction databases
BioGRIDLINC00539
STRING (EMBL)LINC00539
ZODIACLINC00539
Ontologies - Pathways
Huge Navigator LINC00539 [HugePedia]
snp3D : Map Gene to Disease100652865
BioCentury BCIQLINC00539
ClinGenLINC00539
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100652865
Clinical trialLINC00539
Miscellaneous
canSAR (ICR)LINC00539 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00539
EVEXLINC00539
GoPubMedLINC00539
iHOPLINC00539
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:13:17 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.