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LINC00540 (long intergenic non-protein coding RNA 540)

Identity

Other alias-
HGNC (Hugo) LINC00540
LocusID (NCBI) 100506622
Atlas_Id 65483
Location 13q12.11  [Link to chromosome band 13q12]
Location_base_pair Starts at 22210285 and ends at 22276520 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00540   43673
Cards
Entrez_Gene (NCBI)LINC00540  100506622  long intergenic non-protein coding RNA 540
Aliases
GeneCards (Weizmann)LINC00540
Ensembl hg19 (Hinxton)ENSG00000276476 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000276476 [Gene_View]  chr13:22210285-22276520 [Contig_View]  LINC00540 [Vega]
ICGC DataPortalENSG00000276476
TCGA cBioPortalLINC00540
AceView (NCBI)LINC00540
Genatlas (Paris)LINC00540
WikiGenes100506622
SOURCE (Princeton)LINC00540
Genetics Home Reference (NIH)LINC00540
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00540  -     chr13:22210285-22276520 +  13q12.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00540  -     13q12.11   [Description]    (hg19-Feb_2009)
EnsemblLINC00540 - 13q12.11 [CytoView hg19]  LINC00540 - 13q12.11 [CytoView hg38]
Mapping of homologs : NCBILINC00540 [Mapview hg19]  LINC00540 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK054845 BC035104
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00540
Cluster EST : UnigeneHs.255773 [ NCBI ]
CGAP (NCI)Hs.255773
Alternative Splicing GalleryENSG00000276476
Gene ExpressionLINC00540 [ NCBI-GEO ]   LINC00540 [ EBI - ARRAY_EXPRESS ]   LINC00540 [ SEEK ]   LINC00540 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00540 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506622
GTEX Portal (Tissue expression)LINC00540
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00540
DMDM Disease mutations100506622
Blocks (Seattle)LINC00540
Human Protein AtlasENSG00000276476
Protein Interaction databases
FunCoupENSG00000276476
BioGRIDLINC00540
STRING (EMBL)LINC00540
ZODIACLINC00540
Ontologies - Pathways
Huge Navigator LINC00540 [HugePedia]
snp3D : Map Gene to Disease100506622
BioCentury BCIQLINC00540
ClinGenLINC00540
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506622
Clinical trialLINC00540
Miscellaneous
canSAR (ICR)LINC00540 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00540
EVEXLINC00540
GoPubMedLINC00540
iHOPLINC00540
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:56:48 CEST 2017

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