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LINC00543 (long intergenic non-protein coding RNA 543)

Identity

Other alias-
HGNC (Hugo) LINC00543
LocusID (NCBI) 100132234
Atlas_Id 78315
Location 13q12.2  [Link to chromosome band 13q12]
Location_base_pair Starts at 27953526 and ends at 27955363 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00543   43678
Cards
Entrez_Gene (NCBI)LINC00543  100132234  long intergenic non-protein coding RNA 543
Aliases
GeneCards (Weizmann)LINC00543
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:27953526-27955363 [Contig_View]  LINC00543 [Vega]
TCGA cBioPortalLINC00543
AceView (NCBI)LINC00543
Genatlas (Paris)LINC00543
WikiGenes100132234
SOURCE (Princeton)LINC00543
Genetics Home Reference (NIH)LINC00543
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00543  -     chr13:27953526-27955363 +  13q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00543  -     13q12.2   [Description]    (hg19-Feb_2009)
EnsemblLINC00543 - 13q12.2 [CytoView hg19]  LINC00543 - 13q12.2 [CytoView hg38]
Mapping of homologs : NCBILINC00543 [Mapview hg19]  LINC00543 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000246
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00543
Cluster EST : UnigeneHs.197435 [ NCBI ]
CGAP (NCI)Hs.197435
Gene ExpressionLINC00543 [ NCBI-GEO ]   LINC00543 [ EBI - ARRAY_EXPRESS ]   LINC00543 [ SEEK ]   LINC00543 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00543 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100132234
GTEX Portal (Tissue expression)LINC00543
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00543
DMDM Disease mutations100132234
Blocks (Seattle)LINC00543
Protein Interaction databases
BioGRIDLINC00543
STRING (EMBL)LINC00543
ZODIACLINC00543
Ontologies - Pathways
Huge Navigator LINC00543 [HugePedia]
snp3D : Map Gene to Disease100132234
BioCentury BCIQLINC00543
ClinGenLINC00543
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100132234
Clinical trialLINC00543
Miscellaneous
canSAR (ICR)LINC00543 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00543
EVEXLINC00543
GoPubMedLINC00543
iHOPLINC00543
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:56:48 CEST 2017

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