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LINC00545 (long intergenic non-protein coding RNA 545)

Identity

Other alias-
HGNC (Hugo) LINC00545
LocusID (NCBI) 440132
Atlas_Id 65484
Location 13q12.3  [Link to chromosome band 13q12]
Location_base_pair Starts at 31456699 and ends at 31457532 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LINC00545 (13q12.3) / MEDAG (13q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00545   43680
Cards
Entrez_Gene (NCBI)LINC00545  440132  long intergenic non-protein coding RNA 545
Aliases
GeneCards (Weizmann)LINC00545
Ensembl hg19 (Hinxton)ENSG00000236094 [Gene_View]  chr13:31456699-31457532 [Contig_View]  LINC00545 [Vega]
Ensembl hg38 (Hinxton)ENSG00000236094 [Gene_View]  chr13:31456699-31457532 [Contig_View]  LINC00545 [Vega]
ICGC DataPortalENSG00000236094
TCGA cBioPortalLINC00545
AceView (NCBI)LINC00545
Genatlas (Paris)LINC00545
WikiGenes440132
SOURCE (Princeton)LINC00545
Genetics Home Reference (NIH)LINC00545
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00545  -     chr13:31456699-31457532 +  13q12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00545  -     13q12.3   [Description]    (hg38-Dec_2013)
EnsemblLINC00545 - 13q12.3 [CytoView hg19]  LINC00545 - 13q12.3 [CytoView hg38]
Mapping of homologs : NCBILINC00545 [Mapview hg19]  LINC00545 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG199438 HG505527
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)LINC00545
Cluster EST : UnigeneHs.729493 [ NCBI ]
CGAP (NCI)Hs.729493
Alternative Splicing GalleryENSG00000236094
Gene ExpressionLINC00545 [ NCBI-GEO ]   LINC00545 [ EBI - ARRAY_EXPRESS ]   LINC00545 [ SEEK ]   LINC00545 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00545 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)440132
GTEX Portal (Tissue expression)LINC00545
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00545
DMDM Disease mutations440132
Blocks (Seattle)LINC00545
Human Protein AtlasENSG00000236094
Protein Interaction databases
FunCoupENSG00000236094
BioGRIDLINC00545
STRING (EMBL)LINC00545
ZODIACLINC00545
Ontologies - Pathways
Huge Navigator LINC00545 [HugePedia]
snp3D : Map Gene to Disease440132
BioCentury BCIQLINC00545
ClinGenLINC00545
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440132
Clinical trialLINC00545
Miscellaneous
canSAR (ICR)LINC00545 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00545
EVEXLINC00545
GoPubMedLINC00545
iHOPLINC00545
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:11:56 CET 2017

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