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LINC00547 (long intergenic non-protein coding RNA 547)

Identity

Alias_symbol (synonym)FLJ34747
Other alias-
HGNC (Hugo) LINC00547
LocusID (NCBI) 400121
Atlas_Id 65485
Location 13q13.3  [Link to chromosome band 13q13]
Location_base_pair Starts at 38109077 and ends at 38125673 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00547   43682
Cards
Entrez_Gene (NCBI)LINC00547  400121  long intergenic non-protein coding RNA 547
Aliases
GeneCards (Weizmann)LINC00547
Ensembl hg19 (Hinxton)ENSG00000275226 [Gene_View]  chr13:38109077-38125673 [Contig_View]  LINC00547 [Vega]
Ensembl hg38 (Hinxton)ENSG00000275226 [Gene_View]  chr13:38109077-38125673 [Contig_View]  LINC00547 [Vega]
ICGC DataPortalENSG00000275226
TCGA cBioPortalLINC00547
AceView (NCBI)LINC00547
Genatlas (Paris)LINC00547
WikiGenes400121
SOURCE (Princeton)LINC00547
Genetics Home Reference (NIH)LINC00547
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00547  -     chr13:38109077-38125673 +  13q13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00547  -     13q13.3   [Description]    (hg38-Dec_2013)
EnsemblLINC00547 - 13q13.3 [CytoView hg19]  LINC00547 - 13q13.3 [CytoView hg38]
Mapping of homologs : NCBILINC00547 [Mapview hg19]  LINC00547 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092066 LK938483
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)LINC00547
Cluster EST : UnigeneHs.558894 [ NCBI ]
CGAP (NCI)Hs.558894
Alternative Splicing GalleryENSG00000275226
Gene ExpressionLINC00547 [ NCBI-GEO ]   LINC00547 [ EBI - ARRAY_EXPRESS ]   LINC00547 [ SEEK ]   LINC00547 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00547 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)400121
GTEX Portal (Tissue expression)LINC00547
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00547
DMDM Disease mutations400121
Blocks (Seattle)LINC00547
Human Protein AtlasENSG00000275226
Protein Interaction databases
FunCoupENSG00000275226
BioGRIDLINC00547
STRING (EMBL)LINC00547
ZODIACLINC00547
Ontologies - Pathways
Huge Navigator LINC00547 [HugePedia]
snp3D : Map Gene to Disease400121
BioCentury BCIQLINC00547
ClinGenLINC00547
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400121
Clinical trialLINC00547
Miscellaneous
canSAR (ICR)LINC00547 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00547
EVEXLINC00547
GoPubMedLINC00547
iHOPLINC00547
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:11:56 CET 2017

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