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LINC00548 (long intergenic non-protein coding RNA 548)

Identity

Alias_symbol (synonym)FLJ42392
Other alias-
HGNC (Hugo) LINC00548
LocusID (NCBI) 400123
Atlas_Id 65486
Location 13q14.11  [Link to chromosome band 13q14]
Location_base_pair Starts at 40194509 and ends at 40220502 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00548   43683
Cards
Entrez_Gene (NCBI)LINC00548  400123  long intergenic non-protein coding RNA 548
Aliases
GeneCards (Weizmann)LINC00548
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:40194509-40220502 [Contig_View]  LINC00548 [Vega]
TCGA cBioPortalLINC00548
AceView (NCBI)LINC00548
Genatlas (Paris)LINC00548
WikiGenes400123
SOURCE (Princeton)LINC00548
Genetics Home Reference (NIH)LINC00548
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00548  -     chr13:40194509-40220502 -  13q14.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00548  -     13q14.11   [Description]    (hg19-Feb_2009)
EnsemblLINC00548 - 13q14.11 [CytoView hg19]  LINC00548 - 13q14.11 [CytoView hg38]
Mapping of homologs : NCBILINC00548 [Mapview hg19]  LINC00548 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124383
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00548
Cluster EST : UnigeneHs.577960 [ NCBI ]
CGAP (NCI)Hs.577960
Gene ExpressionLINC00548 [ NCBI-GEO ]   LINC00548 [ EBI - ARRAY_EXPRESS ]   LINC00548 [ SEEK ]   LINC00548 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00548 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)400123
GTEX Portal (Tissue expression)LINC00548
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00548
DMDM Disease mutations400123
Blocks (Seattle)LINC00548
Protein Interaction databases
BioGRIDLINC00548
STRING (EMBL)LINC00548
ZODIACLINC00548
Ontologies - Pathways
Huge Navigator LINC00548 [HugePedia]
snp3D : Map Gene to Disease400123
BioCentury BCIQLINC00548
ClinGenLINC00548
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400123
Clinical trialLINC00548
Miscellaneous
canSAR (ICR)LINC00548 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00548
EVEXLINC00548
GoPubMedLINC00548
iHOPLINC00548
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:28:22 CET 2017

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