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LINC00550 (long intergenic non-protein coding RNA 550)

Identity

Other alias-
HGNC (Hugo) LINC00550
LocusID (NCBI) 338862
Atlas_Id 65487
Location 13q21.33  [Link to chromosome band 13q21]
Location_base_pair Starts at 68861285 and ends at 68885325 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00550   43688
Cards
Entrez_Gene (NCBI)LINC00550  338862  long intergenic non-protein coding RNA 550
Aliases
GeneCards (Weizmann)LINC00550
Ensembl hg19 (Hinxton)ENSG00000281778 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000281778 [Gene_View]  chr13:68861285-68885325 [Contig_View]  LINC00550 [Vega]
ICGC DataPortalENSG00000281778
TCGA cBioPortalLINC00550
AceView (NCBI)LINC00550
Genatlas (Paris)LINC00550
WikiGenes338862
SOURCE (Princeton)LINC00550
Genetics Home Reference (NIH)LINC00550
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00550  -     chr13:68861285-68885325 -  13q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00550  -     13q21.33   [Description]    (hg19-Feb_2009)
EnsemblLINC00550 - 13q21.33 [CytoView hg19]  LINC00550 - 13q21.33 [CytoView hg38]
Mapping of homologs : NCBILINC00550 [Mapview hg19]  LINC00550 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC042673
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00550
Alternative Splicing GalleryENSG00000281778
Gene ExpressionLINC00550 [ NCBI-GEO ]   LINC00550 [ EBI - ARRAY_EXPRESS ]   LINC00550 [ SEEK ]   LINC00550 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00550 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)338862
GTEX Portal (Tissue expression)LINC00550
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00550
DMDM Disease mutations338862
Blocks (Seattle)LINC00550
Human Protein AtlasENSG00000281778
IPIIPI00845512   
Protein Interaction databases
FunCoupENSG00000281778
BioGRIDLINC00550
STRING (EMBL)LINC00550
ZODIACLINC00550
Ontologies - Pathways
Huge Navigator LINC00550 [HugePedia]
snp3D : Map Gene to Disease338862
BioCentury BCIQLINC00550
ClinGenLINC00550
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338862
Clinical trialLINC00550
Miscellaneous
canSAR (ICR)LINC00550 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00550
EVEXLINC00550
GoPubMedLINC00550
iHOPLINC00550
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:13:18 CEST 2017

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