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LINC00551 (long intergenic non-protein coding RNA 551)

Identity

Other alias-
HGNC (Hugo) LINC00551
LocusID (NCBI) 283483
Atlas_Id 65488
Location 13q33.3  [Link to chromosome band 13q33]
Location_base_pair Starts at 106617810 and ends at 106631658 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00551   43691
Cards
Entrez_Gene (NCBI)LINC00551  283483  long intergenic non-protein coding RNA 551
Aliases
GeneCards (Weizmann)LINC00551
Ensembl hg19 (Hinxton)ENSG00000272274 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000272274 [Gene_View]  chr13:106617810-106631658 [Contig_View]  LINC00551 [Vega]
ICGC DataPortalENSG00000272274
TCGA cBioPortalLINC00551
AceView (NCBI)LINC00551
Genatlas (Paris)LINC00551
WikiGenes283483
SOURCE (Princeton)LINC00551
Genetics Home Reference (NIH)LINC00551
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00551  -     chr13:106617810-106631658 +  13q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00551  -     13q33.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00551 - 13q33.3 [CytoView hg19]  LINC00551 - 13q33.3 [CytoView hg38]
Mapping of homologs : NCBILINC00551 [Mapview hg19]  LINC00551 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098538
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00551
Cluster EST : UnigeneHs.651365 [ NCBI ]
CGAP (NCI)Hs.651365
Alternative Splicing GalleryENSG00000272274
Gene ExpressionLINC00551 [ NCBI-GEO ]   LINC00551 [ EBI - ARRAY_EXPRESS ]   LINC00551 [ SEEK ]   LINC00551 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00551 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)283483
GTEX Portal (Tissue expression)LINC00551
Human Protein AtlasENSG00000272274-LINC00551 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00551
DMDM Disease mutations283483
Blocks (Seattle)LINC00551
Human Protein Atlas [tissue]ENSG00000272274-LINC00551 [tissue]
Protein Interaction databases
FunCoupENSG00000272274
BioGRIDLINC00551
STRING (EMBL)LINC00551
ZODIACLINC00551
Ontologies - Pathways
Huge Navigator LINC00551 [HugePedia]
snp3D : Map Gene to Disease283483
BioCentury BCIQLINC00551
ClinGenLINC00551
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283483
Clinical trialLINC00551
Miscellaneous
canSAR (ICR)LINC00551 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00551
EVEXLINC00551
GoPubMedLINC00551
iHOPLINC00551
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:28:22 CET 2017

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