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LINC00552 (long intergenic non-protein coding RNA 552)

Identity

Other alias-
HGNC (Hugo) LINC00552
LocusID (NCBI) 100130386
Atlas_Id 65489
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 114451484 and ends at 114454062 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00552   43692
Cards
Entrez_Gene (NCBI)LINC00552  100130386  long intergenic non-protein coding RNA 552
Aliases
GeneCards (Weizmann)LINC00552
Ensembl hg19 (Hinxton)ENSG00000279770 [Gene_View]  chr13:114451484-114454062 [Contig_View]  LINC00552 [Vega]
Ensembl hg38 (Hinxton)ENSG00000279770 [Gene_View]  chr13:114451484-114454062 [Contig_View]  LINC00552 [Vega]
ICGC DataPortalENSG00000279770
TCGA cBioPortalLINC00552
AceView (NCBI)LINC00552
Genatlas (Paris)LINC00552
WikiGenes100130386
SOURCE (Princeton)LINC00552
Genetics Home Reference (NIH)LINC00552
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00552  -     chr13:114451484-114454062 -  13q34   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00552  -     13q34   [Description]    (hg38-Dec_2013)
EnsemblLINC00552 - 13q34 [CytoView hg19]  LINC00552 - 13q34 [CytoView hg38]
Mapping of homologs : NCBILINC00552 [Mapview hg19]  LINC00552 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057435 AK097509
RefSeq transcript (Entrez)NM_001137672
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024498 NT_187596 NW_004929391
Consensus coding sequences : CCDS (NCBI)LINC00552
Cluster EST : UnigeneHs.704121 [ NCBI ]
CGAP (NCI)Hs.704121
Alternative Splicing GalleryENSG00000279770
Gene ExpressionLINC00552 [ NCBI-GEO ]   LINC00552 [ EBI - ARRAY_EXPRESS ]   LINC00552 [ SEEK ]   LINC00552 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00552 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100130386
GTEX Portal (Tissue expression)LINC00552
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00552
DMDM Disease mutations100130386
Blocks (Seattle)LINC00552
Human Protein AtlasENSG00000279770
IPIIPI00384692   
Protein Interaction databases
FunCoupENSG00000279770
BioGRIDLINC00552
STRING (EMBL)LINC00552
ZODIACLINC00552
Ontologies - Pathways
Huge Navigator LINC00552 [HugePedia]
snp3D : Map Gene to Disease100130386
BioCentury BCIQLINC00552
ClinGenLINC00552
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130386
Clinical trialLINC00552
Miscellaneous
canSAR (ICR)LINC00552 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00552
EVEXLINC00552
GoPubMedLINC00552
iHOPLINC00552
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:11:57 CET 2017

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