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LINC00554 (long intergenic non-protein coding RNA 554)

Identity

Other alias-
HGNC (Hugo) LINC00554
LocusID (NCBI) 100861542
Atlas_Id 65490
Location 13q32.3  [Link to chromosome band 13q32]
Location_base_pair Starts at 99994900 and ends at 99997909 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00554   43697
Cards
Entrez_Gene (NCBI)LINC00554  100861542  long intergenic non-protein coding RNA 554
Aliases
GeneCards (Weizmann)LINC00554
Ensembl hg19 (Hinxton)ENSG00000260738 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260738 [Gene_View]  chr13:99994900-99997909 [Contig_View]  LINC00554 [Vega]
ICGC DataPortalENSG00000260738
TCGA cBioPortalLINC00554
AceView (NCBI)LINC00554
Genatlas (Paris)LINC00554
WikiGenes100861542
SOURCE (Princeton)LINC00554
Genetics Home Reference (NIH)LINC00554
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00554  -     chr13:99994900-99997909 -  13q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00554  -     13q32.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00554 - 13q32.3 [CytoView hg19]  LINC00554 - 13q32.3 [CytoView hg38]
Mapping of homologs : NCBILINC00554 [Mapview hg19]  LINC00554 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC068276
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00554
Cluster EST : UnigeneHs.508571 [ NCBI ]
CGAP (NCI)Hs.508571
Alternative Splicing GalleryENSG00000260738
Gene ExpressionLINC00554 [ NCBI-GEO ]   LINC00554 [ EBI - ARRAY_EXPRESS ]   LINC00554 [ SEEK ]   LINC00554 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00554 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100861542
GTEX Portal (Tissue expression)LINC00554
Human Protein AtlasENSG00000260738-LINC00554 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00554
DMDM Disease mutations100861542
Blocks (Seattle)LINC00554
Human Protein Atlas [tissue]ENSG00000260738-LINC00554 [tissue]
Protein Interaction databases
FunCoupENSG00000260738
BioGRIDLINC00554
STRING (EMBL)LINC00554
ZODIACLINC00554
Ontologies - Pathways
Huge Navigator LINC00554 [HugePedia]
snp3D : Map Gene to Disease100861542
BioCentury BCIQLINC00554
ClinGenLINC00554
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100861542
Clinical trialLINC00554
Miscellaneous
canSAR (ICR)LINC00554 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00554
EVEXLINC00554
GoPubMedLINC00554
iHOPLINC00554
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Nov 20 19:37:07 CET 2017

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