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LINC00555 (long intergenic non-protein coding RNA 555)

Identity

Other alias-
HGNC (Hugo) LINC00555
LocusID (NCBI) 100861543
Atlas_Id 65491
Location 13q33.1  [Link to chromosome band 13q33]
Location_base_pair Starts at 102589372 and ends at 102589813 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC00555   43699
Cards
Entrez_Gene (NCBI)LINC00555  100861543  long intergenic non-protein coding RNA 555
Aliases
GeneCards (Weizmann)LINC00555
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:102589372-102589813 [Contig_View]  LINC00555 [Vega]
TCGA cBioPortalLINC00555
AceView (NCBI)LINC00555
Genatlas (Paris)LINC00555
WikiGenes100861543
SOURCE (Princeton)LINC00555
Genetics Home Reference (NIH)LINC00555
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00555  -     chr13:102589372-102589813 -  13q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00555  -     13q33.1   [Description]    (hg19-Feb_2009)
EnsemblLINC00555 - 13q33.1 [CytoView hg19]  LINC00555 - 13q33.1 [CytoView hg38]
Mapping of homologs : NCBILINC00555 [Mapview hg19]  LINC00555 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF339825
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00555
Cluster EST : UnigeneHs.554116 [ NCBI ]
CGAP (NCI)Hs.554116
Gene ExpressionLINC00555 [ NCBI-GEO ]   LINC00555 [ EBI - ARRAY_EXPRESS ]   LINC00555 [ SEEK ]   LINC00555 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00555 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100861543
GTEX Portal (Tissue expression)LINC00555
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00555
DMDM Disease mutations100861543
Blocks (Seattle)LINC00555
Protein Interaction databases
BioGRIDLINC00555
STRING (EMBL)LINC00555
ZODIACLINC00555
Ontologies - Pathways
Huge Navigator LINC00555 [HugePedia]
snp3D : Map Gene to Disease100861543
BioCentury BCIQLINC00555
ClinGenLINC00555
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100861543
Clinical trialLINC00555
Miscellaneous
canSAR (ICR)LINC00555 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00555
EVEXLINC00555
GoPubMedLINC00555
iHOPLINC00555
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:28:23 CET 2017

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