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LINC00557 (long intergenic non-protein coding RNA 557)

Identity

Other alias-
HGNC (Hugo) LINC00557
LocusID (NCBI) 100861544
Atlas_Id 65493
Location 13q32.1  [Link to chromosome band 13q32]
Location_base_pair Starts at 94960041 and ends at 94961319 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00557   43701
Cards
Entrez_Gene (NCBI)LINC00557  100861544  long intergenic non-protein coding RNA 557
Aliases
GeneCards (Weizmann)LINC00557
Ensembl hg19 (Hinxton)ENSG00000260962 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260962 [Gene_View]  chr13:94960041-94961319 [Contig_View]  LINC00557 [Vega]
ICGC DataPortalENSG00000260962
TCGA cBioPortalLINC00557
AceView (NCBI)LINC00557
Genatlas (Paris)LINC00557
WikiGenes100861544
SOURCE (Princeton)LINC00557
Genetics Home Reference (NIH)LINC00557
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00557  -     chr13:94960041-94961319 +  13q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00557  -     13q32.1   [Description]    (hg19-Feb_2009)
EnsemblLINC00557 - 13q32.1 [CytoView hg19]  LINC00557 - 13q32.1 [CytoView hg38]
Mapping of homologs : NCBILINC00557 [Mapview hg19]  LINC00557 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF339811
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00557
Cluster EST : UnigeneHs.48706 [ NCBI ]
CGAP (NCI)Hs.48706
Alternative Splicing GalleryENSG00000260962
Gene ExpressionLINC00557 [ NCBI-GEO ]   LINC00557 [ EBI - ARRAY_EXPRESS ]   LINC00557 [ SEEK ]   LINC00557 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00557 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100861544
GTEX Portal (Tissue expression)LINC00557
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00557
DMDM Disease mutations100861544
Blocks (Seattle)LINC00557
Human Protein AtlasENSG00000260962
Protein Interaction databases
FunCoupENSG00000260962
BioGRIDLINC00557
STRING (EMBL)LINC00557
ZODIACLINC00557
Ontologies - Pathways
Huge Navigator LINC00557 [HugePedia]
snp3D : Map Gene to Disease100861544
BioCentury BCIQLINC00557
ClinGenLINC00557
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100861544
Clinical trialLINC00557
Miscellaneous
canSAR (ICR)LINC00557 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00557
EVEXLINC00557
GoPubMedLINC00557
iHOPLINC00557
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:13:19 CEST 2017

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