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LINC00558 (long intergenic non-protein coding RNA 558)

Identity

Other alias-
HGNC (Hugo) LINC00558
LocusID (NCBI) 100861552
Atlas_Id 65494
Location 13q14.3  [Link to chromosome band 13q14]
Location_base_pair Starts at 53815419 and ends at 53876119 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00558   43702
Cards
Entrez_Gene (NCBI)LINC00558  100861552  long intergenic non-protein coding RNA 558
Aliases
GeneCards (Weizmann)LINC00558
Ensembl hg19 (Hinxton)ENSG00000261517 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261517 [Gene_View]  chr13:53815419-53876119 [Contig_View]  LINC00558 [Vega]
ICGC DataPortalENSG00000261517
TCGA cBioPortalLINC00558
AceView (NCBI)LINC00558
Genatlas (Paris)LINC00558
WikiGenes100861552
SOURCE (Princeton)LINC00558
Genetics Home Reference (NIH)LINC00558
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00558  -     chr13:53815419-53876119 +  13q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00558  -     13q14.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00558 - 13q14.3 [CytoView hg19]  LINC00558 - 13q14.3 [CytoView hg38]
Mapping of homologs : NCBILINC00558 [Mapview hg19]  LINC00558 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC041877
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00558
Cluster EST : UnigeneHs.224691 [ NCBI ]
CGAP (NCI)Hs.224691
Alternative Splicing GalleryENSG00000261517
Gene ExpressionLINC00558 [ NCBI-GEO ]   LINC00558 [ EBI - ARRAY_EXPRESS ]   LINC00558 [ SEEK ]   LINC00558 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00558 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100861552
GTEX Portal (Tissue expression)LINC00558
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00558
DMDM Disease mutations100861552
Blocks (Seattle)LINC00558
Human Protein AtlasENSG00000261517
Protein Interaction databases
FunCoupENSG00000261517
BioGRIDLINC00558
STRING (EMBL)LINC00558
ZODIACLINC00558
Ontologies - Pathways
Huge Navigator LINC00558 [HugePedia]
snp3D : Map Gene to Disease100861552
BioCentury BCIQLINC00558
ClinGenLINC00558
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100861552
Clinical trialLINC00558
Miscellaneous
canSAR (ICR)LINC00558 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00558
EVEXLINC00558
GoPubMedLINC00558
iHOPLINC00558
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:13:19 CEST 2017

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