Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC00561 (long intergenic non-protein coding RNA 561)


Alias (NCBI)-
HGNC (Hugo) LINC00561
LocusID (NCBI) 100861545
Atlas_Id 65497
Location 13q22.2  [Link to chromosome band 13q22]
Location_base_pair Starts at 75932398 and ends at 75935132 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

HGNC (Hugo)LINC00561   43705
Entrez_Gene (NCBI)LINC00561    long intergenic non-protein coding RNA 561
GeneCards (Weizmann)LINC00561
Ensembl hg19 (Hinxton)ENSG00000261206 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261206 [Gene_View]  ENSG00000261206 [Sequence]  chr13:75932398-75935132 [Contig_View]  LINC00561 [Vega]
ICGC DataPortalENSG00000261206
TCGA cBioPortalLINC00561
AceView (NCBI)LINC00561
Genatlas (Paris)LINC00561
SOURCE (Princeton)LINC00561
Genetics Home Reference (NIH)LINC00561
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00561  -     chr13:75932398-75935132 -  13q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00561  -     13q22.2   [Description]    (hg19-Feb_2009)
GoldenPathLINC00561 - 13q22.2 [CytoView hg19]  LINC00561 - 13q22.2 [CytoView hg38]
Genome Data Viewer NCBILINC00561 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC034981
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00561
Gene ExpressionLINC00561 [ NCBI-GEO ]   LINC00561 [ EBI - ARRAY_EXPRESS ]   LINC00561 [ SEEK ]   LINC00561 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00561 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00561 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100861545
GTEX Portal (Tissue expression)LINC00561
Human Protein AtlasENSG00000261206-LINC00561 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00561
Human Protein Atlas [tissue]ENSG00000261206-LINC00561 [tissue]
Protein Interaction databases
Ontologies - Pathways
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:56:20 CEST 2021

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