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LINC00561 (long intergenic non-protein coding RNA 561)

Identity

Other alias-
HGNC (Hugo) LINC00561
LocusID (NCBI) 100861545
Atlas_Id 65497
Location 13q22.2  [Link to chromosome band 13q22]
Location_base_pair Starts at 75932398 and ends at 75935132 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC00561   43705
Cards
Entrez_Gene (NCBI)LINC00561  100861545  long intergenic non-protein coding RNA 561
Aliases
GeneCards (Weizmann)LINC00561
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:75932398-75935132 [Contig_View]  LINC00561 [Vega]
TCGA cBioPortalLINC00561
AceView (NCBI)LINC00561
Genatlas (Paris)LINC00561
WikiGenes100861545
SOURCE (Princeton)LINC00561
Genetics Home Reference (NIH)LINC00561
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00561  -     chr13:75932398-75935132 -  13q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00561  -     13q22.2   [Description]    (hg19-Feb_2009)
EnsemblLINC00561 - 13q22.2 [CytoView hg19]  LINC00561 - 13q22.2 [CytoView hg38]
Mapping of homologs : NCBILINC00561 [Mapview hg19]  LINC00561 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC034981
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00561
Cluster EST : UnigeneHs.638962 [ NCBI ]
CGAP (NCI)Hs.638962
Gene ExpressionLINC00561 [ NCBI-GEO ]   LINC00561 [ EBI - ARRAY_EXPRESS ]   LINC00561 [ SEEK ]   LINC00561 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00561 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100861545
GTEX Portal (Tissue expression)LINC00561
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00561
DMDM Disease mutations100861545
Blocks (Seattle)LINC00561
Protein Interaction databases
BioGRIDLINC00561
STRING (EMBL)LINC00561
ZODIACLINC00561
Ontologies - Pathways
Huge Navigator LINC00561 [HugePedia]
snp3D : Map Gene to Disease100861545
BioCentury BCIQLINC00561
ClinGenLINC00561
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100861545
Clinical trialLINC00561
Miscellaneous
canSAR (ICR)LINC00561 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00561
EVEXLINC00561
GoPubMedLINC00561
iHOPLINC00561
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:54:30 CET 2017

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